Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04220 264 / 1e-87 Plant protein of unknown function (DUF868) (.1) AT4G12690 255 / 2e-84 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT3G13229 237 / 3e-77 Plant protein of unknown function (DUF868) (.1) AT5G48270 226 / 2e-72 Plant protein of unknown function (DUF868) (.1) AT5G28150 171 / 1e-51 Plant protein of unknown function (DUF868) (.1) AT3G04860 163 / 2e-48 Plant protein of unknown function (DUF868) (.1) AT5G11000 113 / 9e-29 Plant protein of unknown function (DUF868) (.1) AT2G27770 104 / 8e-26 Plant protein of unknown function (DUF868) (.1) AT2G25200 104 / 1e-25 Plant protein of unknown function (DUF868) (.1) AT2G36470 48 / 4e-06 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027127 [exp] 602 / 0 AT2G04220 263 / 4e-87 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 259 / 2e-85 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10013755 [exp] 255 / 7e-84 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10006223 [exp] 172 / 5e-52 AT4G12690 213 / 2e-68 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Lus10043317 [exp] 160 / 6e-47 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1) Lus10019467 [exp] 159 / 2e-46 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 159 / 3e-46 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10036872 [exp] 149 / 4e-43 AT4G12690 202 / 2e-64 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Lus10022050 [exp] 146 / 2e-41 AT5G28150 310 / 2e-105 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G467500 [exp] 340 / 1e-117 AT2G04220 270 / 5e-90 Plant protein of unknown function (DUF868) (.1) Potri.005G068100 [exp] 265 / 5e-88 AT2G04220 385 / 4e-135 Plant protein of unknown function (DUF868) (.1) Potri.007G101000 [exp] 244 / 1e-79 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1) Potri.015G084500 [exp] 202 / 6e-63 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.012G089100 [exp] 190 / 2e-58 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.005G050900 [exp] 187 / 7e-58 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 184 / 2e-56 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.010G047700 [exp] 182 / 9e-56 AT5G48270 223 / 3e-71 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 168 / 2e-50 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 160 / 4e-47 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10032896 pacid=23160319 polypeptide=Lus10032896 locus=Lus10032896.g ID=Lus10032896.BGIv1.0 annot-version=v1.0 ATGGCTAATCTTCTGCCACGGTTAGAATCAATCCAAAACGCACAAAACTCAAAGCTAACAACCACGGCAGAAGATGGGCAATCAACCAAAAAGGCTCCCC AGAGCTCAGTCACCTTCATCTACGAAGCCAAAATTGTCGATAAAATTCGAAACATTACGGTCACATGGAGCAAGAACGTCGGCAATAACTACACCCTAGT CATCACGGTTGAAAACCCTAGCAACGAAGAGCCTTACACGTTCAAGCTCGACATAAAAGCGTGGCAGTTCTGGGGCAAAAAGGGCCTGAAATCATTCGAC GTGGACGAGAAGCGAGTGGACGTGTATTGGGATTTCAGGCAGGCGAAATTCTCTAGCAGCCCCCAACCTTCTTCGGACTATTACGTGGCGCTTGTGGACC AGGACGAGATAAGTTTAGTGTTGGGAGGCATGAAAGACGACGCGTGCAAGAGAACCAAGAAGGAACCCTCTCCAGAGGAGCCTGTCTTGCTGTGCAAGAA AGAAAACGTGCTAGGCAAGAAACTGTTCTGTACCAAGACAATGTGGCAGCACAACGACGAAAAGGAGCATGATTTAACCATAGAGACGTCTATATCGGGA CTGGGCGATTCAGAGATGTGGATCAGCATAGACGGGTTCGAAGTGATTCATATCATGAACCTGCAGTGGAGATTCCGTGGGAACGAGAATCTGACGGTGA ACGATGTTCCAGTGCAGATATTTTGGGACGTGCATGACTGGTTGTTTAATGGGTCGGGAACGGGACAAGGGTTGTTCGTTTTCAGTCCCGGAACGATGGA GGAAAACAAACATACCGGTGGACCGAAAGTTGAAGATTCATCCACAGAGAGGGAATCAAATGCAGAGTTCTTTCATGTTGTTTATGCTTGGAAATTTGAG TAA
AA sequence Show only first row Show all	>Lus10032896 pacid=23160319 polypeptide=Lus10032896 locus=Lus10032896.g ID=Lus10032896.BGIv1.0 annot-version=v1.0 MANLLPRLESIQNAQNSKLTTTAEDGQSTKKAPQSSVTFIYEAKIVDKIRNITVTWSKNVGNNYTLVITVENPSNEEPYTFKLDIKAWQFWGKKGLKSFD VDEKRVDVYWDFRQAKFSSSPQPSSDYYVALVDQDEISLVLGGMKDDACKRTKKEPSPEEPVLLCKKENVLGKKLFCTKTMWQHNDEKEHDLTIETSISG LGDSEMWISIDGFEVIHIMNLQWRFRGNENLTVNDVPVQIFWDVHDWLFNGSGTGQGLFVFSPGTMEENKHTGGPKVEDSSTERESNAEFFHVVYAWKFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04220			Plant protein of unknown funct...		Lus10032896 [exp]	0	1
AT5G45275			Major facilitator superfamily ...		Lus10033280 [exp]	4.1	0.9265
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10026811 [exp]	9.3	0.9049
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10023568 [exp]	11.1	0.8943
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031270 [exp]	11.4	0.8860
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10004652 [exp]	11.5	0.9015
AT2G28490			RmlC-like cupins superfamily p...		Lus10006420 [exp]	14.4	0.6871
AT2G24960			unknown protein		Lus10042421 [exp]	17.3	0.8917
AT2G16190			unknown protein		Lus10011284 [exp]	17.7	0.8891
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10026165 [exp]	18.0	0.8892
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	19.0	0.8891

Compare expression of checked genes

Lus10032896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.