Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44730 1271 / 0 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT2G47500 738 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 691 / 0 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 621 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G63640 560 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT1G73860 541 / 5e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 528 / 2e-168 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G41310 522 / 3e-168 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G10310 439 / 4e-137 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 341 / 7e-100 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001306 [exp] 1942 / 0 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10009851 [exp] 720 / 0 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10015212 [exp] 692 / 0 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10029865 [exp] 563 / 0 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10032264 [exp] 547 / 2e-175 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 543 / 1e-173 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10002007 [exp] 536 / 1e-171 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10018049 [exp] 506 / 1e-161 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 503 / 2e-160 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G467600 [exp] 1600 / 0 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 1593 / 0 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.013G011500 [exp] 758 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 754 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 747 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 746 / 0 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G104000 [exp] 599 / 0 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 586 / 0 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 548 / 4e-177 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 545 / 8e-176 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10032897 pacid=23160418 polypeptide=Lus10032897 locus=Lus10032897.g ID=Lus10032897.BGIv1.0 annot-version=v1.0 ATGCCACAAGAAGGGAGCAATATTATTAATAGCAAGAACAACCTCGTCCTCAGAGGGTTCAAAACAACGTTGGGTTCCAATAAGACCGACGACGAGGATA TTGTTTGCAGCGACGTTGAATTGGCTCAACGGAAAGCCGACGAAGCAGCGTCGAGGAGATACCAAGCAGCAGAATGGCTCCGGCGGATGGACGGCGGCGC TTCGGGTTCCTTCCCCAAGCAACCTTCAGAGGAAGACTTCTGCCTCTCTCTCCGAAACGGTCTCATCCTCTGCAACGTTCTCAACAAAGTCAATCCTGGC GCCGTTCCCAAGGTTGTCGAGAATCCTCTGATTGCCGTACAGTCTCCCGAAGGACCTGCCCAATCCGCGATTCAGTACTTCGAGAACATGAGGAACTTCC TCGTTGCGGTTAAGAAGATGGAGCTCTTGACTTTTGAGGCTTCTGATTTGGAGAAGGGAGGGTCCTCAAATAAGGTGGTGGATTGCATTCTTTGTCTGAA AGGATATTATGAATGGAAGCAAGCTGGTGGAATTGGGGTATGGAGGTATGGTGGCCTTGTGAAGATCACTAACTTCCCCAAGGAATCACCACCTTCATTG GTGGGCAGTGAAAGTGCTGATGAATCGTTTGATGAATCCGAATCTTCCCAGTATGATCAGCTGTTAGAATTTCTCCACCTTTCTCATGAGGTCTCAGTAG AGGAATCAAGAACCGCCAATGTTCTTGCATTTCTTTTCGATCATTTCGGACTTGGACTGCTGCAAGCTTACCTTAGAGATTGTAACGGGATTGATGACTT CCCTTTGAATGCAACGGTCATAGATACATTGCTCAGTAAGGTGGTCAAAGATTTCTCAGCGTTGCTTGTTTCGCAAAGCACGCAGGTTGGTCTCTTCTTG AAGAAAATATTGAAGGGGGATATTGGTTACCTCTCCAAGGAGGAATTTCTTGAAGCCATTTCACAGTATCTACGGCATAGAACTAATTTGGTGTCTAGTG ACCTCTCCAAGTTTTGTATCTGCGGAGGCAATAAAAATCCTCTTGAACGCACCCCAACTATAAGTGATAGGTCTTATCTTTCAGAGACAACTGATCTTCA CCAGAAGGAGCTTGAGGAGTTGAGATTCCATTACAAACTGACTAGACAGGAAGTCGTGCAAATGCAAGCAGATTGGAGAGAGGAGCTAAGTCAGCTTGTA CTTCACACCAAGACCCTTGAAGTTGCATCATGTTCATATCACAGTGTTCTGGCGGAAAATCGACAACTTTACAATCAAGTTCAGGACCTTAAAGGCGCCA TACGTGTGTACTGTCGAGTCAGGCCATTTTTACCAGGACATGCAAATGGGCAATCCACAGTAGATTACATTGGAGAAAATGGAAATCTAATGATCATCCA TCCTTTCAAACAAGGAAAGGACGCCAGGAAGGTGTTCAACTTTAATAAAGTGTTTGGTACAAGCTGTACACAAGAGCTCATTTATGGTGACACTCAACCA TTGATCCGGTCGGTGCTGGATGGTTATAACGTTTGCATTTTTGCATATGGACAAACTGGGTCAGGGAAAACTTATACGATGAGTGGCCCTGATTTGAATA CTGAAGAAACATGGGGTGTAAACTACCGAGCTCTTCGCGACCTATTTCAAATCTCAAAGACGAGGGCAGATATCGTAAACTACCAGGTCGGAGTTCAGAT GATTGAAATATACAATGAGCAAGTAAGAGACCTGTTGGTCAGTGATGGCTCCAACAGAAGATATCCTTTCCATGACATCCGCAACAATTCTCAACTGAAT GGACTAAATGTACCCGATGCAAGTTTGATTCGGGTGTCGAGCACTCAAGATGTTCTTGATCTAATGAGAATTGGTCAGAGAAATCGTGCAGTTGGTGCTA CTGCTCTCAATGAGAGAAGTAGCCGTTCTCACAGCATTTTGACAGTTCATGTCTATGGAAAAGAGTTGATTTCTGGATCCATCCTGAAAGGTTGCCTGCA TCTAGTAGATTTGGCTGGAAGTGAACGGGTGGTTAAATCTGAAGCTGTTGGTGAAAGGTTAAAAGAAGCTCAACATATCAATCGGTCTCTTTCAGCCCTT GGTGACGTTATCTATGCTTTGGCACAGAAGAGTCAACACGTTCCCTATAGAAACAGCAAACTAACTCAAGTGCTACAAGATTCTCTAGGTGGCCAGGCAA AGACACTAATGTTTGTCCATATAAATCCTGAAGTTGATGCTATTGGTGAGACAATTAGCACTCTGAAGTTTGCAGAACGAGTTGCTTCTATCGAACTAGG TGCAGCTAAAGCAAACAAAGAAACAGGAGAAATTCGAGATCTCAAAGAAGAGATATCAAGCTTGAAGCAGAGTTTGGAGAGAAAGGAAGTGGAACTTGAA CAACTGAAAACTGTAAATGGTAGAAGCACAGCAGAGGGACAAAGAACAAGGGCTGTTTCTCCTTTCTACATGCCAAGACAAGGCATAAACACCAATGGTA AATCCGAAACAATTCAACGGGCAAACGATGAAAGCAAGGGCTTAGAGAGTAGAAGTTGCTCTTCTGGTAAGCAAAGGAGGTCTAGGTTTCCATCTGCATT CCCGGATAAGGAAAAGCTGCCATTTAAACTGGGTGATGAGAGGTCGGGAAGCTCCACAAAGGTGAGATCACCATCTCCTCCTGTTAGGAGATCAATCTCA ACAGACAGAGGAGCCCTAATAAAGAACAGGACCAAACCAGAGACAATTGAGAATAGCCCAGTTGGAAGAGTACCGTTTCCTGCTAGAGTACCTGTCAGCA AATCTGTTGCATCAATACCTGCAATGCCATCAATAGAGAACAGGTCAAATGCAACAGGCATGTCTCCACAAGAAGCGAAGCAGGATAATATAGCGGGTGC ATTCTATAACTTCCAAAAGAATATTACTTCGAGGAAAGCGTTCCCAGCAGAGTATGAAGAAGAGCAATTCAAACAGGCTCTAAATATAAGACAAGGGGGC ATCAGGAAACCCAAAAATAATGAGATGAAGTTAAAATCAAAACAGCATCAGCTGCCTGCAAAGCTGCCAAAGCCTGAAGTTGGAATGATAATGCTGTCCG AAATGGACACCGGTGGCAAGCAAGAGGAGCCTCGTAGAAGTGACTTCTCAGAGCCAGAAAGCGAAGGAATGCAAACTGGCTCCCCATTTCTTGGTGGGTT TAATGTGAAGAAGCTTCAAAGGAACTCGTCCAGGAACTCTCAGAATCTTGAAGCAAGAGTTATGCAAGCTGCGGAGCCGTTATGGGGTGGGAAGATAGCA AGCAGCGGAGCTAGGAATGTGAAGGAAGTTGGGAATACTGGAAATCCACCAAGTGTGATGATGCCTGAGTTGAGAAGGAGTCGTTCTACTCCTCGCGGGA AGTTCTTCAATTTGCCTTGA
AA sequence Show only first row Show all	>Lus10032897 pacid=23160418 polypeptide=Lus10032897 locus=Lus10032897.g ID=Lus10032897.BGIv1.0 annot-version=v1.0 MPQEGSNIINSKNNLVLRGFKTTLGSNKTDDEDIVCSDVELAQRKADEAASRRYQAAEWLRRMDGGASGSFPKQPSEEDFCLSLRNGLILCNVLNKVNPG AVPKVVENPLIAVQSPEGPAQSAIQYFENMRNFLVAVKKMELLTFEASDLEKGGSSNKVVDCILCLKGYYEWKQAGGIGVWRYGGLVKITNFPKESPPSL VGSESADESFDESESSQYDQLLEFLHLSHEVSVEESRTANVLAFLFDHFGLGLLQAYLRDCNGIDDFPLNATVIDTLLSKVVKDFSALLVSQSTQVGLFL KKILKGDIGYLSKEEFLEAISQYLRHRTNLVSSDLSKFCICGGNKNPLERTPTISDRSYLSETTDLHQKELEELRFHYKLTRQEVVQMQADWREELSQLV LHTKTLEVASCSYHSVLAENRQLYNQVQDLKGAIRVYCRVRPFLPGHANGQSTVDYIGENGNLMIIHPFKQGKDARKVFNFNKVFGTSCTQELIYGDTQP LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLNTEETWGVNYRALRDLFQISKTRADIVNYQVGVQMIEIYNEQVRDLLVSDGSNRRYPFHDIRNNSQLN GLNVPDASLIRVSSTQDVLDLMRIGQRNRAVGATALNERSSRSHSILTVHVYGKELISGSILKGCLHLVDLAGSERVVKSEAVGERLKEAQHINRSLSAL GDVIYALAQKSQHVPYRNSKLTQVLQDSLGGQAKTLMFVHINPEVDAIGETISTLKFAERVASIELGAAKANKETGEIRDLKEEISSLKQSLERKEVELE QLKTVNGRSTAEGQRTRAVSPFYMPRQGINTNGKSETIQRANDESKGLESRSCSSGKQRRSRFPSAFPDKEKLPFKLGDERSGSSTKVRSPSPPVRRSIS TDRGALIKNRTKPETIENSPVGRVPFPARVPVSKSVASIPAMPSIENRSNATGMSPQEAKQDNIAGAFYNFQKNITSRKAFPAEYEEEQFKQALNIRQGG IRKPKNNEMKLKSKQHQLPAKLPKPEVGMIMLSEMDTGGKQEEPRRSDFSEPESEGMQTGSPFLGGFNVKKLQRNSSRNSQNLEARVMQAAEPLWGGKIA SSGARNVKEVGNTGNPPSVMMPELRRSRSTPRGKFFNLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10032897 [exp]	0	1
AT1G20760			Calcium-binding EF hand family...		Lus10012248 [exp]	3.9	0.8965
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10010209 [exp]	11.0	0.8866
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	12.4	0.8434
AT5G12370		SEC10	exocyst complex component sec1...		Lus10007908 [exp]	12.8	0.8554
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10034941 [exp]	15.0	0.8455
AT1G21630			Calcium-binding EF hand family...		Lus10016689 [exp]	17.7	0.8604
AT1G19870		IQD32	IQ-domain 32 (.1)		Lus10033167 [exp]	18.3	0.8173
AT3G20650			mRNA capping enzyme family pro...		Lus10039035 [exp]	19.3	0.7724
AT3G54570			Plant calmodulin-binding prote...		Lus10039544 [exp]	23.9	0.7587
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10032067 [exp]	30.9	0.7945

Compare expression of checked genes

Lus10032897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.