Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55790 232 / 1e-72 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) AT1G55800 162 / 1e-47 Domain of unknown function (DUF2431) (.1) AT5G56060 157 / 9e-47 Domain of unknown function (DUF2431) (.1) AT4G26485 152 / 9e-46 Domain of unknown function (DUF2431) (.1) AT5G56075 149 / 2e-43 Domain of unknown function (DUF2431) (.1) AT5G25030 125 / 6e-35 Domain of unknown function (DUF2431) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032900 [exp] 280 / 1e-93 AT1G55790 256 / 1e-81 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032901 [exp] 213 / 1e-67 AT1G55790 196 / 1e-58 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016345 [exp] 172 / 4e-51 AT1G55790 183 / 2e-53 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10039534 [exp] 165 / 3e-49 AT1G55790 173 / 9e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10000235 [exp] 165 / 2e-48 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10002759 [exp] 165 / 2e-48 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016346 [exp] 61 / 8e-11 AT1G55800 72 / 8e-15 Domain of unknown function (DUF2431) (.1) Lus10032899 [exp] 0 / 1 AT1G55790 62 / 2e-21 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G101200 [exp] 275 / 3e-90 AT1G55790 276 / 8e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G165600 [exp] 242 / 5e-78 AT1G55790 275 / 2e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141900 [exp] 204 / 3e-65 AT1G55790 219 / 7e-69 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438100 [exp] 199 / 3e-63 AT1G55790 207 / 4e-64 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141700 [exp] 196 / 6e-62 AT1G55790 198 / 1e-60 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.006G002700 [exp] 194 / 4e-61 AT1G55790 185 / 1e-55 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438200 [exp] 164 / 2e-48 AT1G55790 169 / 1e-48 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141501 [exp] 97 / 6e-25 AT4G26485 102 / 2e-28 Domain of unknown function (DUF2431) (.1) Potri.016G003133 [exp] 44 / 8e-06 AT1G55800 47 / 1e-07 Domain of unknown function (DUF2431) (.1) Potri.016G003066 [exp] 43 / 2e-05 AT1G55800 48 / 1e-07 Domain of unknown function (DUF2431) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10354 [flax] [poplar] DUF2431 Domain of unknown function (DUF2431)
Representative CDS sequence Show only first row Show all	>Lus10032898 pacid=23160326 polypeptide=Lus10032898 locus=Lus10032898.g ID=Lus10032898.BGIv1.0 annot-version=v1.0 ATGGCGGTGTACCGAGACGAAGTTGGGCGGCGGTGGGTGACTCACTATTCATCCGATGATCAAATACTGTTAGTTGGGGAAGGAGATTTCTCCTTCTCTT TGTGCTTGGCTAGAAACTTCGGCTCTGCTTCTAACATCGTCGCCACCTCTCTTGACAGCAAAGATGAGTTGATGAAGAACTACAAGAATGCCGAATCGAA CATAGCAGAGCTGGAAAGGCTGGGAGGGCAGGTATTACACAGAGTGGATGCAACCCAAATGGGGCGAAATTTCTCAGAGTTAAGCACCCGCAAGTTTGAT CGCATCGTTTTCAACTTCCCTCACGCCGGGTTCCATGGAAAGGAAGATAACATCAATGTCATCCAAGGACATGCGAGACTTGTGCAAGGTTTCTTCAGCA ATGCAGCAGGGATGTTACGACACTATGGAGAAGTACACGTATCGCACAAGACTTCTAAACCGTATTGTTGCTGGAACATTGAAAACCTTGCTAAAGGGAG CTCCTTGGTCTTGAGGACATGTGCCGATTTCAAGAAGGACGATTATCCGGGTTACAACAACAAGAGAGGAGATGTCAGTCACTCCAACGAGTCTGATGAT CCGTTTCCGCTTGGGGAATGCAGCACTTTCAAGTTTATATTTGCGAGGGTGGCGGTCTTGGATCTTCCCGACAACGGTGGCATTCCGGGTGGAAGATGTC GAAAATGTCAGTCCGATGCTGTTAGTACACTTTCTGCTGCTAGAACAAGTTCCACGGTCTTTGTGAACAATGTTGCAGCAGGGCATACTTTCAATGGTGA ACATAATTTGAGGGTTCAGTCTCCGGCAGTAGATTGCCCTTACTTTGGGGTAGGTATAGTAGGAAGAGCATTAGATCAACGGCCTCTTTCGTTGGAGTAC GAAAATTTGAATTATTGGTAA
AA sequence Show only first row Show all	>Lus10032898 pacid=23160326 polypeptide=Lus10032898 locus=Lus10032898.g ID=Lus10032898.BGIv1.0 annot-version=v1.0 MAVYRDEVGRRWVTHYSSDDQILLVGEGDFSFSLCLARNFGSASNIVATSLDSKDELMKNYKNAESNIAELERLGGQVLHRVDATQMGRNFSELSTRKFD RIVFNFPHAGFHGKEDNINVIQGHARLVQGFFSNAAGMLRHYGEVHVSHKTSKPYCCWNIENLAKGSSLVLRTCADFKKDDYPGYNNKRGDVSHSNESDD PFPLGECSTFKFIFARVAVLDLPDNGGIPGGRCRKCQSDAVSTLSAARTSSTVFVNNVAAGHTFNGEHNLRVQSPAVDCPYFGVGIVGRALDQRPLSLEY ENLNYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55790			Domain of unknown function (DU...		Lus10032898 [exp]	0	1
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10029951 [exp]	1.4	0.8751
					Lus10029758 [exp]	3.5	0.8103
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10017529 [exp]	11.8	0.6717
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	12.2	0.6868
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10034238 [exp]	16.6	0.6745
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030893 [exp]	21.1	0.7179
					Lus10021407 [exp]	23.9	0.6731
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	34.8	0.6493
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	36.5	0.6663
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10005050 [exp]	36.5	0.6044

Compare expression of checked genes

Lus10032898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.