Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55790 58 / 6e-10 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) AT1G55800 53 / 2e-08 Domain of unknown function (DUF2431) (.1) AT4G26485 49 / 4e-07 Domain of unknown function (DUF2431) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032901 [exp] 87 / 2e-20 AT1G55790 196 / 1e-58 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10000235 [exp] 60 / 1e-10 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10002759 [exp] 60 / 1e-10 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016345 [exp] 53 / 3e-08 AT1G55790 183 / 2e-53 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10039534 [exp] 44 / 4e-05 AT1G55790 173 / 9e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032900 [exp] 0 / 1 AT1G55790 256 / 1e-81 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032898 [exp] 0 / 1 AT1G55790 232 / 2e-72 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G101200 [exp] 79 / 6e-17 AT1G55790 276 / 8e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G165600 [exp] 63 / 2e-11 AT1G55790 275 / 2e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438200 [exp] 49 / 7e-07 AT1G55790 169 / 1e-48 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.006G002700 [exp] 44 / 3e-05 AT1G55790 185 / 1e-55 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141700 [exp] 44 / 3e-05 AT1G55790 198 / 1e-60 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438100 [exp] 43 / 7e-05 AT1G55790 207 / 4e-64 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10354 [flax] [poplar] DUF2431 Domain of unknown function (DUF2431)
Representative CDS sequence Show only first row Show all	>Lus10032899 pacid=23160367 polypeptide=Lus10032899 locus=Lus10032899.g ID=Lus10032899.BGIv1.0 annot-version=v1.0 ATGGAGTGGCACGCAACCCAAATGAAGCTTCACTCTGAGTTGAGTATGCGCAAGTTTGATCTCATTATATTCAACTTCCCTCACGCTGGGTTTCATGCAA AGGAAGACAGTCCCATTATGATCAGGCAATACAGAAAGAATTCAAAACTTGTGCGAGGTTTCTTGAGGAACGCGGCAGGAATGCTGCTGGAACATTGTAG ACCTTGCTCTAGGGTGTTCCTTGGTCTTGAAGGAACGTGTTCGGTTCAGGATGGGAGATTACTCTGTGTACAGAAACAAGAGCGGAGATGGCAAGAATCC CGACAAGCCATTTCATCTAGGTGCTTGTTGCACGTTCAAGTTTCGTACCAAATAAAAAGAAAAAGCGTGCCAACAGAAAAGTTCGCCACATTGAGTTTGG CTGATCACCATGATGCTGGATTTCCACGGTCGGCTGTAACTGGTCCGAAATGCCAACACGAGTCAGATCGTCCTCGGGCAGGTTATTCCGCAGCCTTTGT GAACCATCGTGGATGTCGTGAGCAGTTCCCGCTGCTGGATGCTCTCTATGGTGTAGGACTCAACCAAGTGTTTCTGGCAGTTCAAGACGGAGGAGCTGTC ATTTCGGCAGCTCGAATTGCTTCTGAAGCAGCAGCATAA
AA sequence Show only first row Show all	>Lus10032899 pacid=23160367 polypeptide=Lus10032899 locus=Lus10032899.g ID=Lus10032899.BGIv1.0 annot-version=v1.0 MEWHATQMKLHSELSMRKFDLIIFNFPHAGFHAKEDSPIMIRQYRKNSKLVRGFLRNAAGMLLEHCRPCSRVFLGLEGTCSVQDGRLLCVQKQERRWQES RQAISSRCLLHVQVSYQIKRKSVPTEKFATLSLADHHDAGFPRSAVTGPKCQHESDRPRAGYSAAFVNHRGCREQFPLLDALYGVGLNQVFLAVQDGGAV ISAARIASEAAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55790			Domain of unknown function (DU...		Lus10032899 [exp]	0	1
					Lus10040545 [exp]	2.0	0.8231
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10008698 [exp]	4.2	0.7308
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10023810 [exp]	8.4	0.7188
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10024728 [exp]	9.2	0.7515
					Lus10017763 [exp]	9.9	0.7677
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	10.4	0.7683
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10004578 [exp]	10.8	0.7627
AT4G16566		HINT4	histidine triad nucleotide-bin...		Lus10007467 [exp]	13.4	0.7549
					Lus10039435 [exp]	14.5	0.7126
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	16.7	0.7328

Compare expression of checked genes

Lus10032899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.