Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55790 256 / 2e-81 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) AT1G55800 171 / 7e-51 Domain of unknown function (DUF2431) (.1) AT5G56060 166 / 6e-50 Domain of unknown function (DUF2431) (.1) AT4G26485 157 / 3e-47 Domain of unknown function (DUF2431) (.1) AT5G56075 150 / 1e-43 Domain of unknown function (DUF2431) (.1) AT5G25030 129 / 5e-36 Domain of unknown function (DUF2431) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032901 [exp] 363 / 3e-126 AT1G55790 196 / 1e-58 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032898 [exp] 280 / 1e-93 AT1G55790 232 / 2e-72 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10000235 [exp] 178 / 3e-53 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10002759 [exp] 178 / 3e-53 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016345 [exp] 175 / 4e-52 AT1G55790 183 / 2e-53 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10039534 [exp] 170 / 4e-51 AT1G55790 173 / 9e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016346 [exp] 61 / 2e-10 AT1G55800 72 / 8e-15 Domain of unknown function (DUF2431) (.1) Lus10032899 [exp] 0 / 1 AT1G55790 62 / 2e-21 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G101200 [exp] 273 / 4e-89 AT1G55790 276 / 8e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G165600 [exp] 227 / 6e-72 AT1G55790 275 / 2e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141700 [exp] 195 / 2e-61 AT1G55790 198 / 1e-60 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141900 [exp] 195 / 3e-61 AT1G55790 219 / 7e-69 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438100 [exp] 192 / 3e-60 AT1G55790 207 / 4e-64 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.006G002700 [exp] 180 / 2e-55 AT1G55790 185 / 1e-55 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438200 [exp] 154 / 1e-44 AT1G55790 169 / 1e-48 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141501 [exp] 92 / 5e-23 AT4G26485 102 / 2e-28 Domain of unknown function (DUF2431) (.1) Potri.016G003066 [exp] 52 / 2e-08 AT1G55800 48 / 1e-07 Domain of unknown function (DUF2431) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10354 [flax] [poplar] DUF2431 Domain of unknown function (DUF2431)
Representative CDS sequence Show only first row Show all	>Lus10032900 pacid=23160414 polypeptide=Lus10032900 locus=Lus10032900.g ID=Lus10032900.BGIv1.0 annot-version=v1.0 ATGAAGAAGATCAAGATCAACGGAGACGAAGCTCAGCGTAGTGTGAATCACTATTTCTCGGACCAAGAAATACTGCTGGTTGGGGAAGGAGACTTCTCCT TCTCCTTGTCTTTGGCTATGATCTTCGGCTCTGCTTCTAACATCGTCGCTACTTCTTTAGACAGCAAAAATGAGCTGATGAAGAAGTACAAGAATGCTGA ATCGAATATTGAAAAGCTGATAGAGTTTGGAGCTCAAGTGATCCATGAAGTGGATGCAACCCGAATGAGGCTTTTCAGAGATTTGATCATGCGGAAGTTT GATCGCATCGTTTTCAACTTCCCTCACGCTGGATTTCATGGACGGGAAAAGAGTCCCAGTATGATCAGAAAGCATTCAGAACTTGTGCAAGGTTTCTTCA GGAACGCAGCAGCCATGCTACGACCCGATGGAGAAGTACACGTAAGCCATAAGACTAAGGAACCATATTGCTATTGGAACCTTGAGGAGCTCGCTTTGGG GTGCTCCTTGGCCTTGCGGGAGAGCGTCAAGTTCAATAAAAAAGACTATCCATGGTACAACAACAAGAGAGGAGATGGCAAGAGGTCCGACAGACCGTTT CATCTAGGGGAATGCAGAACCTTCAAGTTTACAATCACTCGTTACTCTGAATTTACACGGACGACAATGAATCTTCATAAGAAGAATGGCATTATTCCAA CCCGAAGATACAAACTTGGTGGTGATGCAGCCTCTCCTTCAGTTTCATGCAAAAATCAGCTCCCGTTGTCTGCACAAGACAGAGGAAGTATCGATTTGAG AGGTGGTATTGTTCCTGAAGCAGCAGCAGCATTTAGCAGAAGCATGGTTACTCCACGGAACTTGAATCAACAACAACATATGGGTACTGAAGATCAAAGG GCCTTGAGGTCGCTATGGCTGCTATTGATATCTTTTTACGGCCAGCACCCAGAAGTAGCTTGTCGCATATGA
AA sequence Show only first row Show all	>Lus10032900 pacid=23160414 polypeptide=Lus10032900 locus=Lus10032900.g ID=Lus10032900.BGIv1.0 annot-version=v1.0 MKKIKINGDEAQRSVNHYFSDQEILLVGEGDFSFSLSLAMIFGSASNIVATSLDSKNELMKKYKNAESNIEKLIEFGAQVIHEVDATRMRLFRDLIMRKF DRIVFNFPHAGFHGREKSPSMIRKHSELVQGFFRNAAAMLRPDGEVHVSHKTKEPYCYWNLEELALGCSLALRESVKFNKKDYPWYNNKRGDGKRSDRPF HLGECRTFKFTITRYSEFTRTTMNLHKKNGIIPTRRYKLGGDAASPSVSCKNQLPLSAQDRGSIDLRGGIVPEAAAAFSRSMVTPRNLNQQQHMGTEDQR ALRSLWLLLISFYGQHPEVACRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	2.4	0.9846
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	3.5	0.9846
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	4.2	0.9846
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	4.9	0.9846
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	5.5	0.9846
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	6.0	0.9800
					Lus10014629 [exp]	7.0	0.9549
AT3G17152			Plant invertase/pectin methyle...		Lus10017077 [exp]	7.1	0.7281
					Lus10039943 [exp]	7.3	0.8383
					Lus10032804 [exp]	7.5	0.9518

Compare expression of checked genes

Lus10032900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.