Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55790 197 / 4e-59 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) AT4G26485 132 / 6e-38 Domain of unknown function (DUF2431) (.1) AT1G55800 125 / 1e-33 Domain of unknown function (DUF2431) (.1) AT5G56060 111 / 3e-29 Domain of unknown function (DUF2431) (.1) AT5G56075 99 / 2e-24 Domain of unknown function (DUF2431) (.1) AT5G25030 91 / 5e-22 Domain of unknown function (DUF2431) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032900 [exp] 363 / 3e-126 AT1G55790 256 / 1e-81 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032898 [exp] 214 / 8e-68 AT1G55790 232 / 2e-72 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016345 [exp] 113 / 6e-29 AT1G55790 183 / 2e-53 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10039534 [exp] 108 / 9e-28 AT1G55790 173 / 9e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10000235 [exp] 107 / 1e-26 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10002759 [exp] 107 / 1e-26 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032899 [exp] 87 / 3e-20 AT1G55790 62 / 2e-21 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G101200 [exp] 206 / 1e-63 AT1G55790 276 / 8e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G165600 [exp] 175 / 3e-52 AT1G55790 275 / 2e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438100 [exp] 144 / 8e-42 AT1G55790 207 / 4e-64 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141900 [exp] 140 / 3e-40 AT1G55790 219 / 7e-69 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.006G002700 [exp] 134 / 7e-38 AT1G55790 185 / 1e-55 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141700 [exp] 129 / 6e-36 AT1G55790 198 / 1e-60 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141501 [exp] 101 / 1e-26 AT4G26485 102 / 2e-28 Domain of unknown function (DUF2431) (.1) Potri.001G438200 [exp] 102 / 4e-25 AT1G55790 169 / 1e-48 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.016G003066 [exp] 50 / 6e-08 AT1G55800 48 / 1e-07 Domain of unknown function (DUF2431) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10354 [flax] [poplar] DUF2431 Domain of unknown function (DUF2431)
Representative CDS sequence Show only first row Show all	>Lus10032901 pacid=23160376 polypeptide=Lus10032901 locus=Lus10032901.g ID=Lus10032901.BGIv1.0 annot-version=v1.0 ATGGGTTTCTTTGATGTTGCCCCTTTTGGTTTAATTTTGATTTCTGGATTATTTTACCTTGATGATGAAAAAGATGAGCTGATCAAGAAGTACAAGAACG CTGAGTTCAACGTAGCAAAGCTGCAGTCGATGGGAGCGCAGGTATACCATGGAGTGGATGCAACCAAAATGAGCTTTTACCCAGACTTGAATATGCGAAA GTTCGATTGCATCATTTTCAACTTCCCTCACGCTGGGTTTCATGGACGGGAAGATAGTCCCAAAATGATCAGAAAGCATTCAGATCTTCTGAAAGGTTTC TTCAAGAATGCAGCGAGCATGCTACGACCCTACGGAGAGGTACACGTAAGCCACAAAACCAGCGAACCATATTCCAAATGGAACCTTAAAGACCTGGCTT CGACTTGCTCCTTAGCCTTGAGGGAATCTGTCGATTTTAACAAGGAAGACTATCCATGGTACAGCAACAAGAGAGGAGATGGGAAAACCCCCGACATTCC GTTTCGTTTGGGGAAATGCAGTACCTTCAAGTTCACATTCGCTCATTACGAAGGATTTACCCGAGTGGCAGTGAACAATGGTCATCAGAATGGCATTGTT CCAAGCCGAAGATACCAACTTTGTGATGCATCTTCAGTTCAATGTCATAATCAGCTCCCACTGGCGCCTGTGTATGGTGGATATCTCAACCATCCATTTC ATGCATATGACAGAAGAACTATGATTCCGAGAGCTGGTATTGTTCCTGAAGCAGCAGCATTTTGCAGAACCATGGTTCCTCCAAGGAACTTGAATCAACA ACTTCCGTTTACTGAAGATCAACACGCCCTGAGGTCGTTATGGCTGCTAATGGTTTCTCTTTACGGCCAGCATCCAGAAGTAGCTGTTCGCCTATGA
AA sequence Show only first row Show all	>Lus10032901 pacid=23160376 polypeptide=Lus10032901 locus=Lus10032901.g ID=Lus10032901.BGIv1.0 annot-version=v1.0 MGFFDVAPFGLILISGLFYLDDEKDELIKKYKNAEFNVAKLQSMGAQVYHGVDATKMSFYPDLNMRKFDCIIFNFPHAGFHGREDSPKMIRKHSDLLKGF FKNAASMLRPYGEVHVSHKTSEPYSKWNLKDLASTCSLALRESVDFNKEDYPWYSNKRGDGKTPDIPFRLGKCSTFKFTFAHYEGFTRVAVNNGHQNGIV PSRRYQLCDASSVQCHNQLPLAPVYGGYLNHPFHAYDRRTMIPRAGIVPEAAAFCRTMVPPRNLNQQLPFTEDQHALRSLWLLMVSLYGQHPEVAVRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55790			Domain of unknown function (DU...		Lus10032901 [exp]	0	1
AT2G28790			Pathogenesis-related thaumatin...		Lus10005453 [exp]	16.0	0.8911
AT5G59790			Domain of unknown function (DU...		Lus10004943 [exp]	20.4	0.8836
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10020352 [exp]	24.0	0.8823
AT5G40030			Protein kinase superfamily pro...		Lus10014501 [exp]	30.1	0.8816
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10005282 [exp]	48.1	0.8723
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10000104 [exp]	50.3	0.8453
AT1G79060			unknown protein		Lus10031218 [exp]	55.2	0.8616
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	55.9	0.8704
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	58.0	0.8702
AT3G57830			Leucine-rich repeat protein ki...		Lus10023831 [exp]	60.7	0.8702

Compare expression of checked genes

Lus10032901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.