Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54400 89 / 3e-22 HSP20-like chaperones superfamily protein (.1) AT5G20970 72 / 4e-15 HSP20-like chaperones superfamily protein (.1) AT5G04890 68 / 2e-13 RTM2 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) AT2G27140 65 / 6e-13 HSP20-like chaperones superfamily protein (.1) AT1G53540 49 / 1e-07 HSP20-like chaperones superfamily protein (.1) AT1G59860 48 / 5e-07 HSP20-like chaperones superfamily protein (.1) AT4G21870 47 / 5e-07 HSP20-like chaperones superfamily protein (.1) AT1G07400 46 / 3e-06 HSP20-like chaperones superfamily protein (.1) AT3G10680 46 / 6e-06 HSP20-like chaperones superfamily protein (.1) AT4G10250 44 / 3e-05 ATHSP22.0 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015603 [exp] 197 / 3e-65 ND 36 / 0.004 Lus10008426 [exp] 86 / 9e-20 AT2G27140 111 / 7e-29 HSP20-like chaperones superfamily protein (.1) Lus10003356 [exp] 72 / 5e-15 AT2G27140 103 / 3e-26 HSP20-like chaperones superfamily protein (.1) Lus10013655 [exp] 55 / 1e-09 AT1G54400 72 / 3e-16 HSP20-like chaperones superfamily protein (.1) Lus10028874 [exp] 55 / 9e-09 AT5G04890 103 / 4e-24 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10008946 [exp] 50 / 2e-07 AT5G04890 102 / 3e-24 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10004039 [exp] 45 / 2e-06 AT5G37670 150 / 3e-48 HSP20-like chaperones superfamily protein (.1) Lus10018882 [exp] 46 / 7e-06 AT1G76770 153 / 2e-44 HSP20-like chaperones superfamily protein (.1) Lus10028577 [exp] 45 / 2e-05 AT1G76770 152 / 3e-44 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G054900 [exp] 119 / 9e-34 AT1G54400 97 / 3e-25 HSP20-like chaperones superfamily protein (.1) Potri.019G037700 [exp] 96 / 7e-25 AT1G54400 93 / 5e-24 HSP20-like chaperones superfamily protein (.1) Potri.013G054800 [exp] 94 / 3e-24 AT1G54400 98 / 6e-26 HSP20-like chaperones superfamily protein (.1) Potri.013G054700 [exp] 89 / 1e-22 AT1G54400 93 / 3e-24 HSP20-like chaperones superfamily protein (.1) Potri.009G153100 [exp] 76 / 2e-16 AT2G27140 110 / 5e-29 HSP20-like chaperones superfamily protein (.1) Potri.004G191200 [exp] 76 / 2e-16 AT2G27140 106 / 3e-27 HSP20-like chaperones superfamily protein (.1) Potri.004G191101 [exp] 73 / 2e-15 AT2G27140 109 / 2e-28 HSP20-like chaperones superfamily protein (.1) Potri.009G153200 [exp] 69 / 1e-14 AT2G27140 89 / 9e-22 HSP20-like chaperones superfamily protein (.1) Potri.004G191000 [exp] 62 / 1e-12 AT2G27140 81 / 2e-19 HSP20-like chaperones superfamily protein (.1) Potri.008G013800 [exp] 64 / 5e-12 AT5G04890 135 / 3e-36 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10032902 pacid=23160436 polypeptide=Lus10032902 locus=Lus10032902.g ID=Lus10032902.BGIv1.0 annot-version=v1.0 ATGGCTAGGCAGGGTCTTGTGAAGCGTTCTTACGAGGATTTCGAACCATTTTGCAGGTGGGAAAGAAGCCCTGACGTCGATATTCTCCACGTCCATCTCC AGGGGTTTAAGAAGCAACAGCTGAGGATACAGCTAAACAGAGTGGGAGGAATGACGATAACAGGGGAACGGTGTCTGGACTCCGATCATAACGATCGATG GGCGCGATTTGCAAAGGAGACACGTGTCCCCAACGAAATCAACACCAATGCCATTCACGCCAAGCTCTCCTCCGGCATTCTTTCTATCTTCATGCCCAAG AATGCAACGTTGTTGCTTCAGCAACCCCCAGAATCCGCTGATGGCGAACACAATCAGCCGCAGCAGGTTTCAGAGACAGAGCATCAGTATCAGCAAAAAG GGGACTCAAAACCAGATGTTGGAGATTCGATCCATCAAAAGGAGTATCATTGGATGATGAAATTGAACGATACGGCGCTGGTGAGGGGCAAATCTGGAAT CCTAGCTGCTGCTGTTGTTGTAATTGTGGCTGTGGGCGCTGTTCTGGTTGGGTATAGATTGAGAACAAGTTACTCAAATGCTTTGTGGGAAAAATAG
AA sequence Show only first row Show all	>Lus10032902 pacid=23160436 polypeptide=Lus10032902 locus=Lus10032902.g ID=Lus10032902.BGIv1.0 annot-version=v1.0 MARQGLVKRSYEDFEPFCRWERSPDVDILHVHLQGFKKQQLRIQLNRVGGMTITGERCLDSDHNDRWARFAKETRVPNEINTNAIHAKLSSGILSIFMPK NATLLLQQPPESADGEHNQPQQVSETEHQYQQKGDSKPDVGDSIHQKEYHWMMKLNDTALVRGKSGILAAAVVVIVAVGAVLVGYRLRTSYSNALWEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54400			HSP20-like chaperones superfam...		Lus10032902 [exp]	0	1
AT3G18260			Reticulon family protein (.1)		Lus10032451 [exp]	2.2	0.9778
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009316 [exp]	2.8	0.9769
AT5G36930			Disease resistance protein (TI...		Lus10004726 [exp]	4.0	0.9728
AT1G13920			Remorin family protein (.1)		Lus10004665 [exp]	5.5	0.9741
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10031386 [exp]	5.9	0.9649
AT1G76770			HSP20-like chaperones superfam...		Lus10028577 [exp]	6.0	0.9625
AT5G36930			Disease resistance protein (TI...		Lus10010987 [exp]	6.5	0.9662
AT5G18970			AWPM-19-like family protein (....		Lus10041238 [exp]	6.9	0.9635
AT5G36930			Disease resistance protein (TI...		Lus10007852 [exp]	7.1	0.9676
AT1G76770			HSP20-like chaperones superfam...		Lus10018882 [exp]	7.5	0.9466

Compare expression of checked genes

Lus10032902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.