Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14590 68 / 4e-13 EMB2739 embryo defective 2739 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015604 [exp] 141 / 7e-39 AT4G14590 496 / 3e-172 embryo defective 2739 (.1) Lus10009705 [exp] 96 / 3e-23 AT4G14590 214 / 7e-66 embryo defective 2739 (.1) Lus10036025 [exp] 98 / 4e-23 AT4G14590 487 / 2e-162 embryo defective 2739 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G277200 [exp] 83 / 5e-18 AT4G14590 533 / 4e-180 embryo defective 2739 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032903 pacid=23160388 polypeptide=Lus10032903 locus=Lus10032903.g ID=Lus10032903.BGIv1.0 annot-version=v1.0 ATGAGTGACCCAGAAAGTTTCATCCTTGCACTAGAGGAGAAGGTAATTATCTCAACTCCCACTGGATCTGCCTCGAAAGCTGAAAATGCAGGAGTTGCGT TGCTCGGTTATGGTTCCAGCAAGGAGACAGAATTTACCAAAATTCATATCAAGCATCTTCACGGCATTGTCTCCGACGGGTATTCCCATTTTGTTGGTCT AGTTCTGAAAGTTGTTGACTTGTACGCTAAGCTTGTTGATTCTGTGAAATCACAGTTGATTTGGGTTGTTAAAGAAATGGTTGATGTCCTAGGAGTTGGT GTTGATGGCTTGTTGGAGCGTGTTAATATCGTTGTGAAGGGAGTTTCATCAGCTTTCAGTAGTCTTGTTCAGAGAGCTGTTGTACGTTCTATGGATTTTC TGACATCTTGTGATGCCCTGGCACCTTTTTTGAAAGAAAGTCTTGAAAAGTTACTGTTGAGAGTAAATGAGGCAGGCCCTTATCAGTTACATCCATGTCG TCTTTCGAATTGTTCTGCGGTGGCCTCAGTTCTGGGATCAAGATTTGTTTCTGGAGCAACATCGCCCATATCCAGACGACCTAGTACTCCACCTCGCTCG ACTGCAGGGGCACCAACCTTTGGTGGTCTTTCTTCACACAAAACAGTCGTTGATGATTATAAAAAAGGAAATGAAAGTATAGCCAGGAGGTCATTAAATG AAGATCGCCGGTAG
AA sequence Show only first row Show all	>Lus10032903 pacid=23160388 polypeptide=Lus10032903 locus=Lus10032903.g ID=Lus10032903.BGIv1.0 annot-version=v1.0 MSDPESFILALEEKVIISTPTGSASKAENAGVALLGYGSSKETEFTKIHIKHLHGIVSDGYSHFVGLVLKVVDLYAKLVDSVKSQLIWVVKEMVDVLGVG VDGLLERVNIVVKGVSSAFSSLVQRAVVRSMDFLTSCDALAPFLKESLEKLLLRVNEAGPYQLHPCRLSNCSAVASVLGSRFVSGATSPISRRPSTPPRS TAGAPTFGGLSSHKTVVDDYKKGNESIARRSLNEDRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10032903 [exp]	0	1
AT3G12690		AGC1.5	AGC kinase 1.5 (.1.2.3)		Lus10001757 [exp]	3.9	0.7766
AT3G07070			Protein kinase superfamily pro...		Lus10022799 [exp]	4.5	0.7279
					Lus10036397 [exp]	6.3	0.7591
					Lus10031413 [exp]	15.8	0.7075
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10014241 [exp]	19.2	0.7635
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10033519 [exp]	19.3	0.7404
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	23.2	0.7591
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Lus10004583 [exp]	23.3	0.7339
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10021992 [exp]	27.4	0.7414
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Lus10002132 [exp]	39.8	0.6559

Compare expression of checked genes

Lus10032903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.