Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04860 725 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 376 / 4e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 358 / 2e-111 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 353 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 351 / 2e-109 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 356 / 3e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 352 / 5e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 350 / 3e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 343 / 4e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 342 / 4e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009913 [exp] 363 / 9e-112 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 350 / 1e-108 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 347 / 5e-107 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 355 / 6e-107 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 342 / 9e-106 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 345 / 7e-105 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 340 / 3e-104 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 339 / 6e-104 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 335 / 2e-103 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029500 [exp] 920 / 0 AT2G04860 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 379 / 4e-118 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 374 / 7e-118 AT3G22690 582 / 0.0 unknown protein Potri.011G156800 [exp] 372 / 8e-117 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 364 / 3e-114 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 365 / 2e-112 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 361 / 2e-112 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 358 / 7e-112 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 352 / 6e-110 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G058700 [exp] 352 / 8e-109 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10032904 pacid=23160350 polypeptide=Lus10032904 locus=Lus10032904.g ID=Lus10032904.BGIv1.0 annot-version=v1.0 ATGCGGTTTCAGTACCAAATCCTCTGTAATGCAATACGGAGGAGGAGGAGCAACTCGCCGTCGTCGCCGCCGCCGCTTTTCCGTTCGCAGTCCTGCTCGT CTCATTCCTTCCAAGAGCATAGTCCACTTCCACGGTTCGGCATTGGATTCGGCAGCGAATTGATACCAAATGACCACACTTTCTCGCTGCTTCTTAAATC ATTAGCTTCTTCAGCTTCATCCTCTTCAGATCCATTAGCCGCTAAGATTGGGGCCTACCAAATCCAGACCAATTTGATCAAATTTGGTGTTGACCGTTTT CTCTATGTAAGTACTGCTCTTCTCGATCTGTTCATGAAATTAGGGTGCACTGATCACGCACGGAAGCTGTTTGATTATATGCGTGACAGAGATGAAGTGT CTTGGAATGCTCTGATTTGTGGCTACTCGAGAAATGGGCATGATTTCATCTCGCTGGACCTTTTCATTGAAATGCTTAGAGAGGGGTTTCCTCCTAGTTC AACTACTTTAGTCGGTCTGGTTCCCTCGTGTGGCCGCCATGAGTTGCTGTTTCAGGGACGTTCCGTCCATGGGTTTGGAGTTAAGGCTGGCCTTGATTTG GAACCGCGAGTTAAAAACGTCCTCACATCGATGTATGCGAAATGTCACGATCTGGCATCAGTGAACCTTTTGTTTGAAGAAATGAAAGAGAGAAGCGTTG TTTCTTGGAACACAGTAATCGGTGCCTATGCCCAAACTGGTTCCATTGATGAGGCAATGATTGTGTTCACAAGAATGATGAAGGAAAATGTTGAAGTCAA TCCAGTTACTATTATAAGCCTTCTGTCCTCGAATTGCACTACGAAAGTTATCCACTGTTATTCGATAAAAACCTGGCTTGTACATGATGGATCAGTCGTT ACCTCGTTGGTTTGCAGTTATGCAAAGCAAGGAAGCATGGAATCAGCAGAACTGCTCTATAGGTCCTCGGAACAGAAGAAAATGTTGGTTTCATTAACTG CAATTATTTCAGGCTATGCCGAGGAGCGAAATATGTGTATGGTCGTTGAGTGTTTTGCTCGAATGCAGAAGTTAGACATGAAATTGGACTCAGTTGCCAT GGTTTGCATCCTTAACGGGATTGTCGACCCTATTCACTTGAAGATTGGTCTTTCTTTTCATTGCTACACGTTAAAGAATGGCCTTAGCATCCATCCTTTG GTTACAAATGGTCTGATAAGTATGTACTCGAACCTTGATGATTTCGAAGCAGTATTCTTGTTATTTGCAGAAATCGAGGAAAAGCGTTTAATCACTTGGA ATTCAGTTATATCCGGGTGTGCGCAGGCTGGTCGGGGAAATGATGCCCTGCAGTTGTTCTGCAAAATGAGAGATTCGGGACAAGATCCAGATTCCATCAC CATTGCTTGCTTACTGTCTGTATGTTCCCAACTTGGATATCTGAAACTTGGGATGAAGCTTCACAACTACGTCCTCAGGAATAGTTTAGAGGTAGAAGAC TTTGTTGGGACTGCTCTTGTTGATATGTATACTAAATGTGGAAACATAGTGCAAGCAGAAAGGGTGTTCAACGTTCTTCAAAAACCCTGTCTAGCTACAT GGAACACAATGATCTCAGGCTACAGCTGGTATGGTTTCGAGCATAAGGCACTAAATTGTTACACAAAGCTGCGAGAGCGAGGATTAGAGCCTGATCGGAT AACGTTCTTGGGGATATTAGCTGCGTGTACCCATGGTGGCCTTGTTCGTGAAGGAAAGTACTACTTTCGAGTTATGACAGAACAGTTTGGAATCTCACCT GATCTCCAACACTGTGCTTGCTTAGTTGGTCTCCTTGGTCGCGCAGGTCTATTTGACGAAGCAATGTTATTTATCAAGAACATGAATATGGAACCTGATT CTGCTGTATGGGGTGCTCTGCTAGGAGCTTGTTGCATCCACCAAGAGGTCCGGCTTGGAGAATACTTGGCCAAGAAGATGTATCTTCTCGACCATAGAAA TGGTGGTATTTATGTACTAATGTCGAATCTTTATGCTGCCACGGAGAGGTGGGATGATGTAACAAGGGTGAGGGAGCTGATGAGGGATGCTGGAGGTGAT GGTTGTTCAGGAGTTAGCCAAATTGAACCGACTTCGGCTGAACAAATTCTAACAGACTTGTCCCCTCCAGTCGATTTGAACTCGACATCATCAACTTCTC TATCGTGTAATTACGCGATTACCGCAGATATGGAGGCTTCGTTTTAA
AA sequence Show only first row Show all	>Lus10032904 pacid=23160350 polypeptide=Lus10032904 locus=Lus10032904.g ID=Lus10032904.BGIv1.0 annot-version=v1.0 MRFQYQILCNAIRRRRSNSPSSPPPLFRSQSCSSHSFQEHSPLPRFGIGFGSELIPNDHTFSLLLKSLASSASSSSDPLAAKIGAYQIQTNLIKFGVDRF LYVSTALLDLFMKLGCTDHARKLFDYMRDRDEVSWNALICGYSRNGHDFISLDLFIEMLREGFPPSSTTLVGLVPSCGRHELLFQGRSVHGFGVKAGLDL EPRVKNVLTSMYAKCHDLASVNLLFEEMKERSVVSWNTVIGAYAQTGSIDEAMIVFTRMMKENVEVNPVTIISLLSSNCTTKVIHCYSIKTWLVHDGSVV TSLVCSYAKQGSMESAELLYRSSEQKKMLVSLTAIISGYAEERNMCMVVECFARMQKLDMKLDSVAMVCILNGIVDPIHLKIGLSFHCYTLKNGLSIHPL VTNGLISMYSNLDDFEAVFLLFAEIEEKRLITWNSVISGCAQAGRGNDALQLFCKMRDSGQDPDSITIACLLSVCSQLGYLKLGMKLHNYVLRNSLEVED FVGTALVDMYTKCGNIVQAERVFNVLQKPCLATWNTMISGYSWYGFEHKALNCYTKLRERGLEPDRITFLGILAACTHGGLVREGKYYFRVMTEQFGISP DLQHCACLVGLLGRAGLFDEAMLFIKNMNMEPDSAVWGALLGACCIHQEVRLGEYLAKKMYLLDHRNGGIYVLMSNLYAATERWDDVTRVRELMRDAGGD GCSGVSQIEPTSAEQILTDLSPPVDLNSTSSTSLSCNYAITADMEASF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04860			Tetratricopeptide repeat (TPR)...		Lus10032904 [exp]	0	1
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	8.2	0.8273
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032833 [exp]	9.9	0.8191
AT4G17616			Pentatricopeptide repeat (PPR)...		Lus10037275 [exp]	14.0	0.8141
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	15.1	0.8131
AT3G20650			mRNA capping enzyme family pro...		Lus10027333 [exp]	15.3	0.7996
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10028237 [exp]	18.9	0.7538
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000949 [exp]	19.2	0.7920
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	24.0	0.8106
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	24.5	0.7990
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	25.5	0.8101

Compare expression of checked genes

Lus10032904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.