Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26500 374 / 1e-128 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) AT1G55805 131 / 1e-36 BolA-like family protein (.1) AT1G67810 81 / 4e-17 SUFE2 sulfur E2 (.1) AT5G50210 79 / 1e-15 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) AT5G17560 58 / 1e-09 BolA-like family protein (.1) AT5G09830 55 / 2e-09 BolA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015605 [exp] 674 / 0 AT4G26500 387 / 2e-133 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10026101 [exp] 120 / 3e-33 AT4G26500 124 / 1e-37 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10002318 [exp] 110 / 1e-29 AT1G55805 119 / 2e-35 BolA-like family protein (.1) Lus10006468 [exp] 77 / 5e-16 AT1G67810 189 / 1e-59 sulfur E2 (.1) Lus10043314 [exp] 79 / 1e-15 AT5G50210 1020 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10019464 [exp] 74 / 4e-14 AT5G50210 1016 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10011408 [exp] 66 / 4e-12 AT1G67810 167 / 3e-51 sulfur E2 (.1) Lus10009527 [exp] 59 / 5e-10 AT5G17560 145 / 2e-44 BolA-like family protein (.1) Lus10020347 [exp] 58 / 7e-10 AT5G17560 158 / 2e-49 BolA-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165400 [exp] 425 / 1e-148 AT4G26500 404 / 1e-140 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.001G468300 [exp] 419 / 6e-146 AT4G26500 392 / 5e-136 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.012G036800 [exp] 114 / 7e-31 AT1G55805 130 / 6e-40 BolA-like family protein (.1) Potri.015G085300 [exp] 90 / 3e-19 AT5G50210 989 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.012G089500 [exp] 82 / 3e-17 AT5G50210 401 / 1e-134 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.013G074100 [exp] 54 / 2e-08 AT5G17560 156 / 6e-49 BolA-like family protein (.1) Potri.001G309200 [exp] 50 / 1e-07 AT5G09830 132 / 4e-42 BolA-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01722 [flax] [poplar] BolA BolA-like protein CL0233 [flax] [poplar] SufE_NifU PF02657 [flax] [poplar] SufE Fe-S metabolism associated domain
Representative CDS sequence Show only first row Show all	>Lus10032905 pacid=23160412 polypeptide=Lus10032905 locus=Lus10032905.g ID=Lus10032905.BGIv1.0 annot-version=v1.0 ATGGTTCCACTTATATTGTCCCCAAAACACGTCCGTCGGAGAATCTTCTCTGCTAATTGCGTCGGCTTTAGCTCCACCGCTGGGAATTTAGGAAAACCGC CGACGATGGCATCTTCCATCTCCCATTCCTTTCGCCTCCTCACCACCAAATTGCCAATCCCTCTTCCGCGAGCACAACCACTATCCAAACCCCCAATCCC GACTTCCTATCTAATCTCAAAGTCCATCTCTTTCCAGACAATCGACACAAAGAAGCAATCCCGATCCCCTGTATCAGTCTCTGCGTCAAACTCCACGTCT CTGCAGCCCATAGAAGAGCTCCCTCCGAAGCTGCAGGAGATCATCAAGCTGTTCCAGTCGGTACAAGAACCCAAAGCCAAATACGAGCAGCTACTCTTCT ACGGCAAGAACTTGAAACCGCTGGATGCCCAATTCAAGACGAAAGAGAACAAGGTTCAAGGATGCGTTTCTCAAGTCTGGGTGAGGGCTTACCTGGATGA TGATGAGAGGAGAAACGTTTTTTTCGATGCGGATTCGGATTCGGTTCTGACCAAAGGACTTGCTGCTTTGCTAGTCCAGGGCCTCTCTGGGAGGCCAGTA GAGGAGATTGTTAGGGTTTCACCTGATTTCGCTGTGCTTCTTGGGCTGAACCAGAGTTTAACCCCTTCCAGGAACAATGGGTTTTTGAATATGTTGAAGT TGATGCAAAAGAAGGCTATTGAGTTGTATGTCCAGGCAGAAAAGGGCATTGAGTCTGCTGCCCAAAGTTCCAATCTTGATGGGAATGTTCAGACTAATGG TAATGGTCAATCTGACGATTTGATTATTAATGGGGTGGATGATGATGATGATGATGAGGGATTGAATGTGAATTCGAATGAGCCGGAAGAAGTGGGTGGT TTAGGCAGTAGAGGGTTGAGAATTAAGGAAAAGTTGCAGGAAGAATTGAGACCTGTTGAATTGGAAGTGGAAGATGTTTCTTATGCTGGACATGCTGGTG TGAGGGGAAGTGGTGATGGGGAGACGCATTTCAACGTCAAAGTTGTTTCCAAGGATTTTGAAGGGAAGAGCTTGGTGAAGAGGCATAGGTTGATTTATGG TTTGCTGCAAGAGGAATTGCAGAGTGGTTTACATGCATTATCTATTGTCGCGAAGACTCCTGCCGAAGTTTGA
AA sequence Show only first row Show all	>Lus10032905 pacid=23160412 polypeptide=Lus10032905 locus=Lus10032905.g ID=Lus10032905.BGIv1.0 annot-version=v1.0 MVPLILSPKHVRRRIFSANCVGFSSTAGNLGKPPTMASSISHSFRLLTTKLPIPLPRAQPLSKPPIPTSYLISKSISFQTIDTKKQSRSPVSVSASNSTS LQPIEELPPKLQEIIKLFQSVQEPKAKYEQLLFYGKNLKPLDAQFKTKENKVQGCVSQVWVRAYLDDDERRNVFFDADSDSVLTKGLAALLVQGLSGRPV EEIVRVSPDFAVLLGLNQSLTPSRNNGFLNMLKLMQKKAIELYVQAEKGIESAAQSSNLDGNVQTNGNGQSDDLIINGVDDDDDDEGLNVNSNEPEEVGG LGSRGLRIKEKLQEELRPVELEVEDVSYAGHAGVRGSGDGETHFNVKVVSKDFEGKSLVKRHRLIYGLLQEELQSGLHALSIVAKTPAEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10032905 [exp]	0	1
AT2G47840		AtTic20-II	translocon at the inner envelo...		Lus10026842 [exp]	2.0	0.8740
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10014233 [exp]	2.4	0.8520
AT1G58330		ZW2	transcription factor-related (...		Lus10027812 [exp]	3.0	0.8608
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10032033 [exp]	4.2	0.8687
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10013313 [exp]	8.1	0.8004
AT1G55890			Tetratricopeptide repeat (TPR)...		Lus10020073 [exp]	8.5	0.8557
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	9.2	0.8529
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	11.5	0.8449
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004175 [exp]	12.0	0.8234
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10027355 [exp]	12.5	0.8233

Compare expression of checked genes

Lus10032905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.