Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26490 182 / 1e-56 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G56050 174 / 2e-53 unknown protein AT1G13050 122 / 3e-34 unknown protein AT3G26350 119 / 2e-31 unknown protein AT5G56070 58 / 9e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015606 [exp] 441 / 1e-158 AT4G26490 221 / 1e-71 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10011406 [exp] 117 / 1e-29 AT3G26350 209 / 5e-60 unknown protein Lus10006464 [exp] 111 / 5e-28 AT3G26350 208 / 2e-63 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165500 [exp] 263 / 2e-88 AT4G26490 275 / 3e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G468400 [exp] 254 / 7e-85 AT4G26490 265 / 5e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.010G049000 [exp] 129 / 4e-35 AT3G26350 189 / 1e-56 unknown protein Potri.009G019600 [exp] 46 / 7e-06 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 41 / 0.0003 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10032906 pacid=23160318 polypeptide=Lus10032906 locus=Lus10032906.g ID=Lus10032906.BGIv1.0 annot-version=v1.0 ATGATGCAAGCTCTTCCATCACCACCACCACCATCTCAGCTGGAGTCCATACCAGAAAAGGAAGCAACTTCAGCAGTCAATCTCAACCAGAATGTCATTT CCAAGCATGTAAGGAAGTACCAAATCTCACAACCACCAGTAGCAGCAGAGGTGGTTTCATTTTCTGACACCAAGTTGCTAACAGGAACTCAGCCAATACT CCATCCTCTCCGTCCTCGGAGAACCAACCCGCTTGTCTGGTTCGGAGCCATCCTATGCCTCATCTTCAGTCTTCTTCTCATCTTCTTGGCAATTACAACT TTAATCGCCTACCTCGTCGTCAGACCCAAACACCCGGCTTTCGATGTCCCGCATGCCCGACTCAATGGGATATACTTCGATTCACCGGAGTACTTCAATG GGGATATAAGCTTGATTGTAAACTTCACCAACCAAAATAAGAAAATGGATGTCACATTCGAGTACGCCGACATCAAAGTCTACTTTGGTAACAAACTCAT AGGGGCTCAAGCTCTTAACCCTTTCACTCAGAGACCGAGAGCGATATCGTGGCAAACAGTTCATGTCATATCGAGTCTGGTCTATTTGCCACAGAGTTCT GCTGTAGAACTCCAAAAGCAAGTGCTGAGTAACAAGGTCACTTACAACATACGAGCTACGTTCAAGCTGAAAGCGACCCTCGGTCTCTTCCACTATACTT ACTGGCTTCATGGTAAGTGTGATACCGCCATCAGTAGCCCTCCAGCTGGCGTTCTAGTTTCTCGGAGCTGCAACACATATAGGTGA
AA sequence Show only first row Show all	>Lus10032906 pacid=23160318 polypeptide=Lus10032906 locus=Lus10032906.g ID=Lus10032906.BGIv1.0 annot-version=v1.0 MMQALPSPPPPSQLESIPEKEATSAVNLNQNVISKHVRKYQISQPPVAAEVVSFSDTKLLTGTQPILHPLRPRRTNPLVWFGAILCLIFSLLLIFLAITT LIAYLVVRPKHPAFDVPHARLNGIYFDSPEYFNGDISLIVNFTNQNKKMDVTFEYADIKVYFGNKLIGAQALNPFTQRPRAISWQTVHVISSLVYLPQSS AVELQKQVLSNKVTYNIRATFKLKATLGLFHYTYWLHGKCDTAISSPPAGVLVSRSCNTYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26490			Late embryogenesis abundant (L...		Lus10032906 [exp]	0	1
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10012080 [exp]	1.0	0.9624
AT4G26490			Late embryogenesis abundant (L...		Lus10015606 [exp]	1.7	0.9487
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026224 [exp]	2.8	0.9562
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042712 [exp]	6.0	0.9124
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	6.0	0.9348
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10042445 [exp]	7.7	0.9248
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001754 [exp]	10.1	0.9184
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10029787 [exp]	10.2	0.9084
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	11.3	0.9128
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022304 [exp]	11.8	0.9140

Compare expression of checked genes

Lus10032906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.