Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24680 322 / 7e-107 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G004300 [exp] 446 / 3e-155 AT5G24680 393 / 6e-135 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF07910 [flax] [poplar] Peptidase_C78 Peptidase family C78
Representative CDS sequence Show only first row Show all	>Lus10032907 pacid=23160379 polypeptide=Lus10032907 locus=Lus10032907.g ID=Lus10032907.BGIv1.0 annot-version=v1.0 ATGCATTCCTTGCCCAATTGCCCCATCTGTAACCAGAACCTTCCGCCTTCCCAACTCCAGTGGCATGTCAACAGCCACTTCGAATTGGAGGATGAGTACC AGGCGGTGGCAGTGGCAGAAGACGAAACGGCTAATCGCGATGATATTTTGTCTTCAGACGAGCAGCTTGCTCGAGACCTTCAGTTGGCCGAACAACTTTC CCTCCCTATCATTGCGCCAAGTCAATCCACAGAAGGCCAGAAGGATAAATCTTGCTTGGTCGGCTTGCAGACGAGAGCCTTCTTCCGTCGCGTTGAACCA GACGGCGGCGGATTGATGACCTTGCTTTACCAGCGTTTGTTAAAATCACCAGATGTTAAGATCAAGGGCAAATACGCAGCTACCAAAACGACAACGTTTC TGTGCGGCTACGTTGATCACTACCAGAGTAAGGGCTGCAAGGATTCTGAATGGGGTTGCGGATACCGTAACATCCAGATGCTGGCCTCTCACTTGCTCTC TTGCAGAGAGGATGCCAGAAGAGTTCTGTTTGGCGGTTGTGGGTTTGTTCCTGATATCTCATTTCTACAAGGTTGGATTGAGATGGCTTGGAAGAACGGT TTTGATCCCCTTGGCTCCCAACAGTTCAACCATTCTATCTGTGGCTCCACACGTTGGATTGGAACCACTGAATGCGCTGCCTTGCTCCGCTCTTTTGGTG TTCGAGCTAGGATTGTTGATTTTGGTACTAAGGAATCGGAGTCCCTTTTCCTCTCCGTTCCTGGTACCAGCATTAGTTCGGTTAGGGAGACGAATGTCCG AGGCAAGCGAAAATCTGACACTTTATATGGTCCCATGGATAAATATCTCCTCCACACTGACAGAATAAAGGATGGTGAGCCTCGAAGCTATACCACCAAC AAAAGCAGTCAAACCACGTCGAGTAAGTGTTCGAAAAATGATGTGGATGCGCAAGTTGTTATTGATTGGATATGGAAGTACTTCTCACAGGAAGGCTCAA GGGTGTCTGTTCATCAGCAACAAGTTGTCTTGACAGGCAAAGCGCCCTTGTACTTCCAACATGATGGACATTCAAGAACAATAGTTGGCATTCAGTGTAG ACAGCTCAAGAATGGATCACAAGGGCATACTCTCTTAATTTTGGACCCAGCTCATAGCACGGAAGGTCTAGAAAGATCACTCAGAGAGGATGCTCAGTGG GAGAAGTCGATAAAAAGAGGAGTGCACACACTTAAGCGAAGCCAATATCAGATATGTTACATTGATTCGGGAATTGCAAGCGGAGATGAGATGGAGCATC TCAAGAGCTTAGATAGTATCTTTATTGAGTTGTGA
AA sequence Show only first row Show all	>Lus10032907 pacid=23160379 polypeptide=Lus10032907 locus=Lus10032907.g ID=Lus10032907.BGIv1.0 annot-version=v1.0 MHSLPNCPICNQNLPPSQLQWHVNSHFELEDEYQAVAVAEDETANRDDILSSDEQLARDLQLAEQLSLPIIAPSQSTEGQKDKSCLVGLQTRAFFRRVEP DGGGLMTLLYQRLLKSPDVKIKGKYAATKTTTFLCGYVDHYQSKGCKDSEWGCGYRNIQMLASHLLSCREDARRVLFGGCGFVPDISFLQGWIEMAWKNG FDPLGSQQFNHSICGSTRWIGTTECAALLRSFGVRARIVDFGTKESESLFLSVPGTSISSVRETNVRGKRKSDTLYGPMDKYLLHTDRIKDGEPRSYTTN KSSQTTSSKCSKNDVDAQVVIDWIWKYFSQEGSRVSVHQQQVVLTGKAPLYFQHDGHSRTIVGIQCRQLKNGSQGHTLLILDPAHSTEGLERSLREDAQW EKSIKRGVHTLKRSQYQICYIDSGIASGDEMEHLKSLDSIFIEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24680			Peptidase C78, ubiquitin fold ...		Lus10032907 [exp]	0	1
AT4G09680		ATCTC1	conserved telomere maintenance...		Lus10032880 [exp]	2.4	0.8120
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10008998 [exp]	13.1	0.7469
AT5G58200			Calcineurin-like metallo-phosp...		Lus10016863 [exp]	21.6	0.6534
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030921 [exp]	23.2	0.7195
AT2G15630			Pentatricopeptide repeat (PPR)...		Lus10022128 [exp]	34.4	0.6270
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010675 [exp]	34.4	0.7003
AT1G74600		OTP87	organelle transcript processin...		Lus10024220 [exp]	38.4	0.6685
AT2G24530			unknown protein		Lus10026225 [exp]	39.5	0.7057
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	42.9	0.6855
AT3G06620			PAS domain-containing protein ...		Lus10040540 [exp]	43.8	0.6846

Compare expression of checked genes

Lus10032907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.