Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27585 496 / 2e-175 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G54100 472 / 6e-166 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT3G01290 71 / 2e-13 AtHIR2 hypersensitive induced reaction 2, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G51570 59 / 1e-09 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G62740 57 / 5e-09 AtHIR4, ATHIR1 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT1G69840 52 / 2e-07 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015597 [exp] 553 / 0 AT4G27585 383 / 7e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015032 [exp] 65 / 3e-11 AT5G51570 532 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10038907 [exp] 62 / 2e-10 AT5G51570 529 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10033099 [exp] 61 / 4e-10 AT5G62740 533 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015356 [exp] 60 / 9e-10 AT5G62740 506 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004268 [exp] 57 / 5e-09 AT5G62740 535 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10007268 [exp] 57 / 6e-09 AT5G62740 510 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10036715 [exp] 50 / 1e-06 AT1G69840 516 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10037213 [exp] 50 / 1e-06 AT1G69840 514 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005500 [exp] 493 / 7e-174 AT4G27585 463 / 3e-162 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G001900 [exp] 489 / 2e-172 AT4G27585 499 / 2e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G009800 [exp] 411 / 1e-141 AT4G27585 382 / 3e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G011345 [exp] 295 / 1e-97 AT4G27585 268 / 2e-87 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G010001 [exp] 271 / 6e-89 AT4G27585 245 / 6e-79 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078000 [exp] 62 / 1e-10 AT5G62740 518 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G129000 [exp] 60 / 7e-10 AT5G51570 480 / 4e-173 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078100 [exp] 57 / 8e-09 AT5G62740 488 / 3e-176 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10032909 pacid=23160373 polypeptide=Lus10032909 locus=Lus10032909.g ID=Lus10032909.BGIv1.0 annot-version=v1.0 ATGAGCTATCTGATTGATGAGAAAATTCTTAGTACCTTCAAAATGTGGAGAAGTAGCAGCAGTCGTGTTGTGAAGCAAACCTTTCAATTCAGGCAGCAGG CCGTGGAACAGCTGACCGAATTGCCCAAACTCCCTACCCTCTTTAATCATACTGCTCCAATATCCACTTCATCTGCTCCCAGCTCCATATCTCATGCCCG TCTGTCTTCCCTTCCCTTACTACGGAGTCCCCACTCTTCCCCCTTCTCTGTTGTCCCTGTCCGCCATATCCGCTCCAGTACCGGTTATGAGACATCCCCA CCAGTGAATTGGGGTGTCAGGATTGTTCCAGAGAAGAGAGCATTTGTGATAGAGCGATTTGGGAAGTACCTAAAGACGCTTTCATCTGGAATTCACTTGT TGATCCCTTTTGTGGACCGAATTGCTTACGTCCATTCCTTAAAAGAAGAGGCAATTCCCATTCCTGACCAATCTGCTATCACCAAGGATAATGTCAGCAT TCTTATTGATGGTGTTCTCTATGTCAAGATTATTGATCCTAAATTGGCTTCTTACGGAGTGGAGAACCCGATCTATGCTGTTATTCAGTTGGCGCAGACC ACCATGCGTAGTGAGCTTGGTAAAATTACACTTGATAAGACCTTTGAGGAACGTGACACTCTGAACGAGAAAATAGTGGAGGCCATTAATGTTGCTGCAA GTGACTGGGGTCTCCAGTGCCTTCGATATGAAATAAGGGATATATCTCCACCACGTGGAGTGAAAGTAGCCATGGAGATGCAGGCAGAAGCTGAACGTAA AAAGAGGGCCCAAGTTCTTGAGTCTGAAGGAGAGAGGCAAGCTAACATTAATATTGCTGATGGAAGGAAACTTTCTGCCATATTGTCAGCTGAAGGTGAA GCACAAGCTATCCTCGCTAAAGCTGATACACCAGCCAAAGGCATTGCCCTTGTATCAAGAACCCTTAAGGAGACCGGTGGAGCAGAGGCAGCAAGTCTGA AAGTTGCCGAACAATACATTCAGGCCTTCGGCAACATTGCTAAACAGGGGACTACAATGTTGCTTCCTTCCTCGGCTGCTAATCCGGCGAGCATGATTGC TCAAGCTCTTACCATGTACAAAAGCGTGCTTGGGGATAGTCCTTCTAACACTGCTGGCCATGAAAGCTCTTCTACACTTGAGCTTGCAGGAGGTGGAGAA CACAATGATGAAGTTGCGAAGGAGATTCCAAGTCGGAACAAGAGTGGATCTGGTTTTTCGCTTCAGAAGCCGAGGGCAGAGTAG
AA sequence Show only first row Show all	>Lus10032909 pacid=23160373 polypeptide=Lus10032909 locus=Lus10032909.g ID=Lus10032909.BGIv1.0 annot-version=v1.0 MSYLIDEKILSTFKMWRSSSSRVVKQTFQFRQQAVEQLTELPKLPTLFNHTAPISTSSAPSSISHARLSSLPLLRSPHSSPFSVVPVRHIRSSTGYETSP PVNWGVRIVPEKRAFVIERFGKYLKTLSSGIHLLIPFVDRIAYVHSLKEEAIPIPDQSAITKDNVSILIDGVLYVKIIDPKLASYGVENPIYAVIQLAQT TMRSELGKITLDKTFEERDTLNEKIVEAINVAASDWGLQCLRYEIRDISPPRGVKVAMEMQAEAERKKRAQVLESEGERQANINIADGRKLSAILSAEGE AQAILAKADTPAKGIALVSRTLKETGGAEAASLKVAEQYIQAFGNIAKQGTTMLLPSSAANPASMIAQALTMYKSVLGDSPSNTAGHESSSTLELAGGGE HNDEVAKEIPSRNKSGSGFSLQKPRAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10032909 [exp]	0	1
AT2G03640			Nuclear transport factor 2 (NT...		Lus10037066 [exp]	1.0	0.9106
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10027304 [exp]	3.2	0.8968
AT5G43960			Nuclear transport factor 2 (NT...		Lus10022873 [exp]	4.6	0.8889
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	5.5	0.8899
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10041991 [exp]	6.0	0.8834
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	6.0	0.8968
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031410 [exp]	7.9	0.8572
AT4G20980			Eukaryotic translation initiat...		Lus10011171 [exp]	8.7	0.8953
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	8.9	0.8943
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10004676 [exp]	10.5	0.8770

Compare expression of checked genes

Lus10032909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.