Plant FIBer expression Database

Lus10032910 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042590
[exp]
264 / 5e-90 ND /
Lus10015895
[exp]
208 / 7e-69 ND /
Lus10033051
[exp]
186 / 4e-59 ND /
Lus10006395
[exp]
184 / 1e-58 ND /
Lus10016136
[exp]
184 / 5e-57 ND /
Lus10008161
[exp]
188 / 2e-56 AT4G02930 759 / 0.0 GTP binding Elongation factor Tu family protein (.1)
Lus10024749
[exp]
162 / 3e-50 ND /
Lus10000882
[exp]
143 / 7e-44 ND /
Lus10003831
[exp]
145 / 3e-42 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10032910 pacid=23160431 polypeptide=Lus10032910 locus=Lus10032910.g ID=Lus10032910.BGIv1.0 annot-version=v1.0
ATGAGCAATTCAGCAGATGCATCTGTGAGTAAGGGTGACAGAATCAATTACATCAAACACTTTTTATCCGACGATGTTTACGATACTGTCGATGAAGCTT
GTGAAGCTGCAAAGCGAATTGCCCAGCCACTTAATTTCAAGTTGACTAAAGGATCCAACAAAATAAACAGGGCAGAGCGAGAGTACCGTGTGTACCTGTA
TTGCGCTCGGGGACCTGCTCGTAAATCCTCATGTTCCAACTCGCCGAAACGAATTACGAAGACGAAGAAGTGTCACTGCCCCTTCAAACTGACGGTGAGG
TGTCATGTCGTAGGTAGCGAGTGGAAATTCTTTATTGACGGTGTAGGCCACAACAACAATCGTACAGTCTCAAAAGGATACCATAATCATTTTTTTGTGT
CATATCTCGAAGTTAGCACAGAAAGCAATGCACTTACGAATGAAGAGAAGAGGGAGATTAAGGACATACTTGCGACTCACACACAGCCGAACAAGATCAG
GGGGTTTTGGTGTGACAAATCTTCCGCCGAAGAAGCAGAGATCAGGAGAAAGCGAGCGAGAGCAACTGTCCTTCCGTCAGAGTCTATCGCCCCAATTTCG
CCGCCGATCCTGAAAGAAGTCGAATCGATTGACCTCAGGTATTCCATGTCTGTGAATTGGCGACGTACTGGTTGTTTATGA
AA sequence
>Lus10032910 pacid=23160431 polypeptide=Lus10032910 locus=Lus10032910.g ID=Lus10032910.BGIv1.0 annot-version=v1.0
MSNSADASVSKGDRINYIKHFLSDDVYDTVDEACEAAKRIAQPLNFKLTKGSNKINRAEREYRVYLYCARGPARKSSCSNSPKRITKTKKCHCPFKLTVR
CHVVGSEWKFFIDGVGHNNNRTVSKGYHNHFFVSYLEVSTESNALTNEEKREIKDILATHTQPNKIRGFWCDKSSAEEAEIRRKRARATVLPSESIAPIS
PPILKEVESIDLRYSMSVNWRRTGCL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10032910
[exp]
0 1
AT1G10710 PHS1 poor homologous synapsis 1 (.1... Lus10026691
[exp]
9.1 0.6998
AT4G18960 MADS AG AGAMOUS, K-box region and MADS... Lus10007324
[exp]
9.3 0.8272
AT3G58780 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1... Lus10029275
[exp]
13.5 0.8163
AT5G15800 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-... Lus10034663
[exp]
17.5 0.8112
Lus10011636
[exp]
20.4 0.8069
AT3G16970 Plant self-incompatibility pro... Lus10011753
[exp]
22.8 0.8069
AT4G16295 SPH1 S-protein homologue 1 (.1) Lus10011892
[exp]
25.0 0.8069
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Lus10022473
[exp]
27.0 0.8069
AT4G10950 SGNH hydrolase-type esterase s... Lus10023070
[exp]
28.8 0.8069
AT1G34575 FAD-binding Berberine family p... Lus10023373
[exp]
30.6 0.8069

Lus10032910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.