Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24650 229 / 3e-75 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT3G49560 202 / 1e-64 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015593 [exp] 401 / 6e-142 AT5G24650 218 / 3e-70 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10005289 [exp] 302 / 7e-103 AT5G24650 303 / 1e-103 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032959 [exp] 289 / 2e-98 AT5G24650 295 / 6e-101 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10043170 [exp] 42 / 0.0003 AT4G26670 220 / 5e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032577 [exp] 42 / 0.0003 AT4G26670 221 / 1e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G000600 [exp] 274 / 9e-93 AT5G24650 300 / 6e-103 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.012G004600 [exp] 275 / 3e-92 AT5G24650 262 / 2e-87 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.001G360300 [exp] 44 / 5e-05 AT5G55510 254 / 2e-86 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.011G088500 [exp] 44 / 6e-05 AT5G55510 252 / 1e-85 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10032913 pacid=23160413 polypeptide=Lus10032913 locus=Lus10032913.g ID=Lus10032913.BGIv1.0 annot-version=v1.0 ATGGAGGACGGCAAGCAAGGAGTACTGGTGGATGGCAAGCAAGGAGTACTTGTGTTGCCCAAAGCAAACAACCCCGGTCAGAACCCAATTCAGTCGTTGC AACTCAAGTTCAAAGAGATGGAGACTGGGTTCAAAACTTGGCTTTCCCAGCAGTCTACCCCTGTTGAGGTCGGCATCGTCACCGCCACCAACGCCATCCA GGGAGGCGCCATGGGTGGCCTCATGAGTAACTTCACTTCCAACATGGCCCCCTCCGTTCCTCCGCCGTCGACTGATGCTGTTCCTAAGGGAATCGCCGCC TTCAATCAAGCCCAGGCGCTTGTAGGGGGGCCTTGGGTTCAAGCTCGGAATTTTGCTGTCATGGCGGGTGCCAATGCTGGTATTGCTTGTTTCATGAAAC GATTAAGAGGCAAAGAGGATGTCCAGTCTAGTATGGTGGCAGCTTTTGGCTCAGGAGTCTTGTTTACATTGGTGAGTGGGACTGGTGGGATAGGTAACCC AAATCCTGCAGTGAATGCACTCTCTTCTGGAGTCTTTTTCGCAGCTATGCAAGGCGGCATATACCAGATAGGACAGAAGTTCTCTGAATACCAATCCCAA TCTCAACCGCAATCGCAATCTCAATCTCAACCTACAATCGAAGATGAGTACTATGCGAGGACAAGGTCGATGCTGGATAAGCTTGGCCTCCAGAACTACG AGAAGAATTTCAAGAAGGGGTTGCTGAACGACAGCACACTACCATTGTTGACAGACAGGCAAGCAATCTTTTGTAGTGCTGCTGATTCTTTTGTCTATTT ACCTTGA
AA sequence Show only first row Show all	>Lus10032913 pacid=23160413 polypeptide=Lus10032913 locus=Lus10032913.g ID=Lus10032913.BGIv1.0 annot-version=v1.0 MEDGKQGVLVDGKQGVLVLPKANNPGQNPIQSLQLKFKEMETGFKTWLSQQSTPVEVGIVTATNAIQGGAMGGLMSNFTSNMAPSVPPPSTDAVPKGIAA FNQAQALVGGPWVQARNFAVMAGANAGIACFMKRLRGKEDVQSSMVAAFGSGVLFTLVSGTGGIGNPNPAVNALSSGVFFAAMQGGIYQIGQKFSEYQSQ SQPQSQSQSQPTIEDEYYARTRSMLDKLGLQNYEKNFKKGLLNDSTLPLLTDRQAIFCSAADSFVYLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24650			Mitochondrial import inner mem...		Lus10032913 [exp]	0	1
AT3G63510			FMN-linked oxidoreductases sup...		Lus10019714 [exp]	11.0	0.7679
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	11.9	0.7938
AT5G36230			ARM repeat superfamily protein...		Lus10018182 [exp]	21.5	0.7591
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10036446 [exp]	22.1	0.7867
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10025805 [exp]	31.1	0.7541
AT4G29400			Protein of unknown function (D...		Lus10032701 [exp]	35.7	0.7778
AT2G16250			Leucine-rich repeat protein ki...		Lus10007171 [exp]	41.8	0.6829
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	50.8	0.7363
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10003872 [exp]	57.8	0.7567
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Lus10035420 [exp]	63.0	0.7586

Compare expression of checked genes

Lus10032913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.