Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24600 291 / 1e-99 Protein of unknown function, DUF599 (.1.2) AT3G18215 233 / 1e-76 Protein of unknown function, DUF599 (.1) AT4G31330 149 / 5e-44 Protein of unknown function, DUF599 (.1) AT5G10580 143 / 1e-41 Protein of unknown function, DUF599 (.1.2) AT5G46060 134 / 6e-38 Protein of unknown function, DUF599 (.1) AT5G24790 126 / 5e-35 Protein of unknown function, DUF599 (.1) AT5G43180 90 / 2e-21 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015590 [exp] 499 / 0 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10013947 [exp] 278 / 1e-93 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10005272 [exp] 270 / 3e-90 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10009010 [exp] 242 / 2e-80 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10009640 [exp] 173 / 9e-54 AT3G18215 224 / 4e-74 Protein of unknown function, DUF599 (.1) Lus10026976 [exp] 155 / 2e-46 AT4G31330 347 / 2e-122 Protein of unknown function, DUF599 (.1) Lus10013943 [exp] 138 / 1e-39 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1) Lus10005266 [exp] 137 / 4e-39 AT5G46060 207 / 4e-67 Protein of unknown function, DUF599 (.1) Lus10020172 [exp] 112 / 3e-30 AT4G31330 271 / 3e-93 Protein of unknown function, DUF599 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G001500 [exp] 310 / 5e-107 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.015G001300 [exp] 306 / 1e-105 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.006G278000 [exp] 152 / 4e-45 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.001G372900 [exp] 150 / 1e-44 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.011G059400 [exp] 123 / 8e-34 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1) Potri.016G137800 [exp] 97 / 9e-24 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10032916 pacid=23160345 polypeptide=Lus10032916 locus=Lus10032916.g ID=Lus10032916.BGIv1.0 annot-version=v1.0 ATGGAGCAGAGCCTACTCGATTGCACATTGGTCCCTCTGGGACTGGTGATGATGATCTCCTACCACCTATGGCTCCTGTTCCAAATTGTCAGCCACCCTT ACCACACCATCATCGGCGTCAATGCCGTTAATCGAGACTTCTGGGTTCGCGCCATGATGGAGGACACGTCCAAGAACGGAGTTCTTGCAGTGCAGACGCT ACGGAACAACATAATGGCATCGACTCTGTTAGCATCAACAGCGATCATGCTCAGCTCTCTGATCGCCATGCTTATGGTGGGGAACAAATCGGGCAACGCG CGGCTGGTTTTGGTGCTGATGGGAGACACAAGTGACAAGATTCTCTCTTTAAAGTTCTTCTCGATACTTCTCTGCTTCCTGCTGGCATTTCTCTTCACCG TACAGTCCATAAGGTACTACAGCCACGCCAGCTTCCTCATCAACGTCCCTGTAAAGGACAAGAAGAGGATGATCAAAATGGGCGGCAGCGATCATCATCC TCACCATCTGACGGTGAATTATGTGATCAGGTCTGTGAACAGGGGAGGCTATTTCTGGTCGTTGGGACTGCGTGCCTTCTACTTCTCGCTGCCTCTGTTT ATGTGGATATTCGGACCGATTCCAATGTTCTTGTGCTGCTTTGTGTTGGTTTCCACGCTCTACTTCCTCGACATTACGTTCCAGGATTATGTCGCTTGTG CTTCTGTTGATGATGATGGTGCTCCTGGGGAGAGTGAGGACGGAGGTCGTGTTCTTATGAACTACCACGACCACGATTCTCCCAAACTCACAGACTGCCA CCAAGTTTGA
AA sequence Show only first row Show all	>Lus10032916 pacid=23160345 polypeptide=Lus10032916 locus=Lus10032916.g ID=Lus10032916.BGIv1.0 annot-version=v1.0 MEQSLLDCTLVPLGLVMMISYHLWLLFQIVSHPYHTIIGVNAVNRDFWVRAMMEDTSKNGVLAVQTLRNNIMASTLLASTAIMLSSLIAMLMVGNKSGNA RLVLVLMGDTSDKILSLKFFSILLCFLLAFLFTVQSIRYYSHASFLINVPVKDKKRMIKMGGSDHHPHHLTVNYVIRSVNRGGYFWSLGLRAFYFSLPLF MWIFGPIPMFLCCFVLVSTLYFLDITFQDYVACASVDDDGAPGESEDGGRVLMNYHDHDSPKLTDCHQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24600			Protein of unknown function, D...		Lus10032916 [exp]	0	1
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	1.4	0.9521
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	3.5	0.9335
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	4.6	0.9287
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002984 [exp]	7.1	0.9087
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	7.5	0.9117
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	7.7	0.8943
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020100 [exp]	8.8	0.9069
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	9.8	0.9072
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002979 [exp]	11.3	0.9043
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032217 [exp]	12.0	0.8817

Compare expression of checked genes

Lus10032916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.