Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54090 795 / 0 DNA mismatch repair protein MutS, type 2 (.1) AT1G65070 224 / 2e-61 DNA mismatch repair protein MutS, type 2 (.1.2) AT3G24320 99 / 9e-21 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT3G18524 90 / 5e-18 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G25540 86 / 1e-16 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT3G24495 82 / 2e-15 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G02070 75 / 2e-13 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT4G17380 74 / 3e-13 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G20475 64 / 3e-10 ATMSH5 MUTS-homologue 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015589 [exp] 1621 / 0 AT5G54090 791 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Lus10025647 [exp] 247 / 4e-69 AT1G65070 892 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Lus10018187 [exp] 241 / 4e-67 AT1G65070 899 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Lus10005743 [exp] 95 / 1e-19 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10027452 [exp] 90 / 6e-19 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10014462 [exp] 87 / 3e-17 AT3G24320 1506 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10042967 [exp] 86 / 9e-17 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10023718 [exp] 83 / 7e-16 AT3G24320 1594 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10032469 [exp] 82 / 1e-15 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005000 [exp] 971 / 0 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Potri.004G041900 [exp] 258 / 3e-73 AT1G65070 924 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Potri.010G065000 [exp] 94 / 2e-19 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.015G142900 [exp] 89 / 9e-18 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.012G060000 [exp] 87 / 2e-17 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.014G121701 [exp] 87 / 5e-17 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.006G156314 [exp] 79 / 8e-15 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 79 / 9e-15 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.001G156200 [exp] 69 / 9e-12 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.011G089500 [exp] 63 / 6e-10 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V
Representative CDS sequence Show only first row Show all	>Lus10032917 pacid=23160392 polypeptide=Lus10032917 locus=Lus10032917.g ID=Lus10032917.BGIv1.0 annot-version=v1.0 ATGGATATGGCGCAGGCGACACCGTGTCACTACCGGACGTTTGGCCAGAAATCTCCACTGATGATCAAATCCGATTTCCTACTCACCGACGTTTGTTCAT CAACCGGAAGGCTGCACACGACGTCGTTGAGGGTGAAGAAGAAGAGCCAGAGTCGTCATCTTCAACTCCGTTTTCAACTCAAATTCCCATCTCAATCGCA TATTTGTTCAGCTCTGCAGCTACAATCCCGTGCTTCTGCTTTCACGAATTCTTCAATTCATGAGAAATCAGGTGTTCGCTTCCACAGTCTCATGCTGCTG GAATGGGACAAGCTCTGTGACTTGGTCGCTTCCTTTGCCTCTACTTCATTGGGACGCCAAACCACTATCGCGCAATTATGGAAACTCGACAATAGCTACG ACGACAGTTTGAGGCTGTTGCGAGAAACGAACGCCGCTCTGCAAATGCGTAGCCACGGCGGTTGCCGCTTGGACTTTGTCGGCCTGGACCTCCTTCTGGT GGAATCTGCAATACAACATGCTCGGAGGAGATTAAATGTTAGTGGAAATGAAGCGATTGCGATTGCTGCTCTGCTTGATTCTGCTCTTTGCTTGCAGCTT AACCTTAAATCTGCGGTTAAGGAAGATGCCGATTGGTACAGCCGTTTTCTTCCTCTTTCGCAAGTGATTATGGATATGGTCATAAACCGGTCTCTGGTTA AAATGATCCAGCAAGTTGTTGATGAAGATGGCTCTATCAAAGATTCTGCGAGTTCTGCCTTAAAACGGTCACGTGCTCAGGTCCGCATGCTTGAGGAAAA GCTATACCGGTTAATGGACGCCTTAATCAGGAATCAGGAAAACGATACATCCTTTCTGGAAGTAAGTAGTGTAGATGGAAGATGGTGCGTGAAATCAGGA CCTGGTCAGCTAACAAATGTTAAGGGCCTTTTGTTGTCCAGGCAATCAGGCAGAGGAAGCATTATAGAGCCACTCTCTGCAGTTCCTTTAAATGATGAGT TGCAACAGGCAAGATTATCAGTGGCACAGGCAGAAGCTGATGTGCTTTCCATGCTAACGGAGAAGATTCGAGATGATGTTGATGACATCGAGAAAGTATT AGAGAGTGTGGTTCAGCTGGATGCGATAAATGCCCGAGCAAGTTATAGTCATTCATATGGAGGTGTCTGCCCTGATCTTTATCCACCCGAAGACATGGAC GAGACAGATGCAGCTTGTTCTTCTTTACCAGGGAAGAACACATCGAATTCCATTAAGAGAGAGTGGCTATTGTATATGCCTGAAGCTTCACATCCTTTGT TGCTTCAGCAGCATAAGCAACGCCTTCAGGAGGCAAAGAAGGATAGCAGAAATGCTTTGGCTAGAAAAATGCAAGGAGATAGTGCGTTACTGAAGGGAGA AGCAAGAGTGGCTAGTTCACCAACACAAGTGCAGGACTCTGGACCAGAACAGCCTCCTCCAGTTCCTGTTGATTTCTTTATAGAGAAAAGAACAAGAGTA CTTGTTATAACTGGCCCAAACACTGGGGGTAAAACGATTTGCTTGAAGACTGTTGGATTGGCTGCTATGATGGCTAAGTCAGGTCTTCATATCCTATCCT CCGAATCTGTGCAAATTCCTTGGTTTGATTCTATTTTTGCTAACATTGGCGAAGAACAATCTTTATCCGAATCTTTGTCCACATTTTCTGGCCGCTTAAA ACAGATAAGTGAAATTCGGTCAGAATCAACAAGCCAATCGTTGGTACTACTTGATGAAGTTGGGGCAGGGACAAACCCTCTTGAAGGTGCTGCACTAGGC ATGGCAATGCTGGAATCTTTTGCCGATAGTGGTGCGTTACTGACGCTAGCTACAACACATCACGGCGAACTGAAATCACTGAAATACAGTAATGATGCCT TTGAAAATGCATCTATGGAGTTTGATGAAGAGAATTTGAAGCCCACTTATAAGATTCTGTGGGGAGTACCAGGCCGCTCAAATGCCATAAATATATCTGA AAAGCTAGGATTGCCTAGTAGCATTGTTTATGATGCTAGAGAGCGTATTGGTGCTTCTAACGAGGAGATCAATGAGGTCATAATTGGCATGGAAAGATCC AAGCAGGATTTTCGAGATCTTTTAAATGACGCCGGACATCATCTAGGGCTCTCAAGGAATATTCATAAAAATCTGTTGCGGGCTAAAAGAAGGATCATGG AGCATGCTGCAAATCAAAGATACAGCAAGGTGCGGGAAATATCTGAAGCTGCTGCCTTGGCACGGTCTACTATTCGGAAGAAAGTACGAGAGCTCCAAGC TCGGGCAGCCCATACAGCTACATCAGAGAAAACACAGCTAGTAACTACTAAAAAACAGAGTGTTCCCACTGCTGGCGACAAACTTCTTGCAACAAAAAAT GAAGGGTTATCACCAGGGAACATTACAAAGCAAGTACCTCCAGAGAGGATGTGGCTTCCCAAGGTGGGTGAGATGGTTCAAGTTTCCAGGTTAGGGAGGA AAGCAACAGTATTGACAGTGGATCCGGAAAAAGAAGATGTAGTTGTTCAAGCTGGTAACATGAAATTGAAGCTAAAATTGGCTGATATTCGGACTTGA
AA sequence Show only first row Show all	>Lus10032917 pacid=23160392 polypeptide=Lus10032917 locus=Lus10032917.g ID=Lus10032917.BGIv1.0 annot-version=v1.0 MDMAQATPCHYRTFGQKSPLMIKSDFLLTDVCSSTGRLHTTSLRVKKKSQSRHLQLRFQLKFPSQSHICSALQLQSRASAFTNSSIHEKSGVRFHSLMLL EWDKLCDLVASFASTSLGRQTTIAQLWKLDNSYDDSLRLLRETNAALQMRSHGGCRLDFVGLDLLLVESAIQHARRRLNVSGNEAIAIAALLDSALCLQL NLKSAVKEDADWYSRFLPLSQVIMDMVINRSLVKMIQQVVDEDGSIKDSASSALKRSRAQVRMLEEKLYRLMDALIRNQENDTSFLEVSSVDGRWCVKSG PGQLTNVKGLLLSRQSGRGSIIEPLSAVPLNDELQQARLSVAQAEADVLSMLTEKIRDDVDDIEKVLESVVQLDAINARASYSHSYGGVCPDLYPPEDMD ETDAACSSLPGKNTSNSIKREWLLYMPEASHPLLLQQHKQRLQEAKKDSRNALARKMQGDSALLKGEARVASSPTQVQDSGPEQPPPVPVDFFIEKRTRV LVITGPNTGGKTICLKTVGLAAMMAKSGLHILSSESVQIPWFDSIFANIGEEQSLSESLSTFSGRLKQISEIRSESTSQSLVLLDEVGAGTNPLEGAALG MAMLESFADSGALLTLATTHHGELKSLKYSNDAFENASMEFDEENLKPTYKILWGVPGRSNAINISEKLGLPSSIVYDARERIGASNEEINEVIIGMERS KQDFRDLLNDAGHHLGLSRNIHKNLLRAKRRIMEHAANQRYSKVREISEAAALARSTIRKKVRELQARAAHTATSEKTQLVTTKKQSVPTAGDKLLATKN EGLSPGNITKQVPPERMWLPKVGEMVQVSRLGRKATVLTVDPEKEDVVVQAGNMKLKLKLADIRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	0	1
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10024387 [exp]	1.4	0.9089
AT2G45700			sterile alpha motif (SAM) doma...		Lus10038078 [exp]	1.7	0.9191
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	3.5	0.8804
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10022263 [exp]	6.5	0.8615
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10025377 [exp]	7.2	0.8636
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10022174 [exp]	7.3	0.8539
AT5G14460			Pseudouridine synthase family ...		Lus10003661 [exp]	8.2	0.8596
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	8.3	0.8993
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032833 [exp]	9.2	0.8649
AT3G49410			Transcription factor IIIC, sub...		Lus10042710 [exp]	10.6	0.8693

Compare expression of checked genes

Lus10032917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.