Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33140 300 / 1e-104 PGY2 PIGGYBACK2, Ribosomal protein L6 family (.1) AT1G33120 300 / 1e-104 Ribosomal protein L6 family (.1) AT4G10450 293 / 1e-101 Ribosomal protein L6 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015588 [exp] 338 / 3e-119 AT1G33140 350 / 4e-125 PIGGYBACK2, Ribosomal protein L6 family (.1) Lus10032962 [exp] 330 / 3e-116 AT1G33140 345 / 4e-123 PIGGYBACK2, Ribosomal protein L6 family (.1) Lus10005286 [exp] 328 / 1e-115 AT1G33140 347 / 1e-123 PIGGYBACK2, Ribosomal protein L6 family (.1) Lus10000926 [exp] 40 / 0.0004 AT3G21510 181 / 3e-59 histidine-containing phosphotransmitter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147700 [exp] 305 / 2e-106 AT4G10450 331 / 2e-117 Ribosomal protein L6 family (.1) Potri.011G148700 [exp] 304 / 5e-106 AT1G33140 330 / 4e-117 PIGGYBACK2, Ribosomal protein L6 family (.1) Potri.001G454101 [exp] 303 / 8e-106 AT1G33140 331 / 1e-117 PIGGYBACK2, Ribosomal protein L6 family (.1) Potri.001G453900 [exp] 303 / 8e-106 AT1G33140 331 / 1e-117 PIGGYBACK2, Ribosomal protein L6 family (.1) Potri.001G454000 [exp] 303 / 1e-105 AT1G33140 331 / 2e-117 PIGGYBACK2, Ribosomal protein L6 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00347 [flax] [poplar] Ribosomal_L6 Ribosomal protein L6
Representative CDS sequence Show only first row Show all	>Lus10032918 pacid=23160321 polypeptide=Lus10032918 locus=Lus10032918.g ID=Lus10032918.BGIv1.0 annot-version=v1.0 ATGAAGACCATCCTCTCATCGGAGACAATGGACATCCCCGACGGCGTGAAGATCAAGGTCCACGCCAAGATCATTGAGGTCGAAGGTCCACGAGGTAAGC TCGTTCGTGACTTCAAGCATCTCAACCTCGATTTCCAGCTGATCAAGGACGAGGAGACCGGAAGCCGCAAGCTGAAGATCGACGCATGGTTCGGATCCAG GAAGACCAGTGCCTCTATCCGTACCGCTCTCAGCCACGTCCAGAATCTCATCACTGGAGTCACCAAGGGTTACCGCTACAAGATGCGCTTCGTGTATGCC CATTTCCCTATCAACGCCTCCATCACCAACACCAACAAGGCTATCGAGATCCGTAACTTTCTCGGAGAGAAGCGGGTGAGGAAGGTTGATATGCTTGATG GTGTGACTGTTATCCGATCCGAGAAGGTGAAGGATGAGTTGGTTCTGGATGGTAACGATGTTGAGCTAGTTTCACGATCTTGTGCCCTTATCAACCAGGG AATCTTAAATCGAACCTTTGACACATTGGTGGATCTTCGGGGTCCTGATAGGCCGAGGCATATCCTAGATTCTGTCGACAACTTCATTTATTTCAGCCGT GCTCATATGAATGAGCTCCACCACCAAATGCGCAGCCATGTAATTGATTTTGAAGTTGTCGCCGACTATGTCGATATAATCAAGAGTAACTCGGATAGGT AA
AA sequence Show only first row Show all	>Lus10032918 pacid=23160321 polypeptide=Lus10032918 locus=Lus10032918.g ID=Lus10032918.BGIv1.0 annot-version=v1.0 MKTILSSETMDIPDGVKIKVHAKIIEVEGPRGKLVRDFKHLNLDFQLIKDEETGSRKLKIDAWFGSRKTSASIRTALSHVQNLITGVTKGYRYKMRFVYA HFPINASITNTNKAIEIRNFLGEKRVRKVDMLDGVTVIRSEKVKDELVLDGNDVELVSRSCALINQGILNRTFDTLVDLRGPDRPRHILDSVDNFIYFSR AHMNELHHQMRSHVIDFEVVADYVDIIKSNSDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032918 [exp]	0	1
AT2G40510			Ribosomal protein S26e family ...		Lus10030533 [exp]	1.7	0.9581
AT5G48760			Ribosomal protein L13 family p...		Lus10007137 [exp]	1.7	0.9640
AT5G60670			Ribosomal protein L11 family p...		Lus10037402 [exp]	2.4	0.9461
AT1G74050			Ribosomal protein L6 family pr...		Lus10038775 [exp]	2.4	0.9588
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10005586 [exp]	4.5	0.9544
AT5G48760			Ribosomal protein L13 family p...		Lus10016679 [exp]	5.3	0.9450
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	5.9	0.9535
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10013719 [exp]	6.6	0.9333
AT5G09500			Ribosomal protein S19 family p...		Lus10024865 [exp]	6.7	0.9401
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	6.9	0.9407

Compare expression of checked genes

Lus10032918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.