Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50380 920 / 0 Prolyl oligopeptidase family protein (.1) AT1G69020 256 / 1e-74 Prolyl oligopeptidase family protein (.1) AT5G66960 189 / 1e-50 Prolyl oligopeptidase family protein (.1) AT1G76140 139 / 8e-34 Prolyl oligopeptidase family protein (.1.2) AT1G20380 127 / 3e-30 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015387 [exp] 1046 / 0 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10015586 [exp] 476 / 3e-163 AT1G50380 348 / 5e-114 Prolyl oligopeptidase family protein (.1) Lus10004631 [exp] 286 / 1e-85 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 274 / 3e-81 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032964 [exp] 187 / 4e-56 AT1G50380 206 / 4e-64 Prolyl oligopeptidase family protein (.1) Lus10017568 [exp] 199 / 7e-54 AT5G66960 1124 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10021235 [exp] 153 / 1e-38 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10019994 [exp] 132 / 1e-31 AT1G76140 1008 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10032378 [exp] 132 / 2e-31 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001300 [exp] 983 / 0 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.010G137801 [exp] 291 / 3e-87 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G035900 [exp] 212 / 1e-58 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.005G247400 [exp] 135 / 7e-33 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247300 [exp] 130 / 5e-31 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 129 / 9e-31 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G013900 [exp] 119 / 1e-27 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF02897 [flax] [poplar] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10032920 pacid=23160454 polypeptide=Lus10032920 locus=Lus10032920.g ID=Lus10032920.BGIv1.0 annot-version=v1.0 ATGCATATAGCTACCTCGTCAGAAACTCCACCGGAGACATTGTCGCCGCCGGTGGCAAAGAAAGTCGAACATGCAATGGAGATGTTCGGCGATGTCAGAG TCGACAACTACTACTGGCTCCGTGACGACTCCCGCTCTGATCCTCAAGTCCTCTCCTACCTTCATCAGGAGAATGTTTACACCGATTTCATCATGGCCGA TACCAAAGGATTTGAAGAGAAATTATACCAAGAGCTAAGAGGAAGAATCAAGGAGGATGACACTTCAGCGCCGATTAGAAAAGGGGATTACTACTACAAC ACCAAAACTTTACAAGGAAAGGAGTATGTTCAACATTGCCGCCGACGATCCATTTCCGGCCCCCATGATGATATCTCGGTTCATGACGTCATGACTTGTG ACGCTCCCGAGCAGGTTCTCTTAGATGAGAACGTCAAGGCTCAGCCTCATCAGTACTACACCATTGGTGCTTTCAAGGTCAGTCCTAACCAGAAGTTGTT CTCTTACTCTGAAGACACAAAGGGAAATGAAAATTACACTGTCCACGTCGTTGATGTTGAGACTCTTGTTCCTGTTGAGAAGCCTCTCATTAACGTGGCT ACAGCCCTACAGTGGGCTGGTGATGATGCTTTGGCTTACGTTACCAGGGACGACGCCCTTCGTTCCTACAAGGTTTGGCTACATAGGTTGGGAACAGACC AATCAACGGACTCGTGTCTTCACCACGAGAAAGATGAAAAGTTTTCACTGAGTCTGCAACTGTCAGGAAGCCACAAGTACTTGTTCATAGCATCTAACAG CAAAACTACAGGATTCGTGTTCTACGTTGATGTTACTAAACTGGAAGAGGGTGCCAGGGTTTTGACAACTTGTGTCACTGGCATTGATACCTCAGCTGCC AGCCATGGCGGCAATCATTTCTTCATCATACGTAGAAGTGATCAAGTTTTCAATTCGGAGCTGCTTGCTTGCCCTGTAGATGACATTTCCTCAATTTCGG TTCTTATTCCTCACCGGGACAGCATAAAGCTTAAAGAGATGCAACTATTCGCCAACCACCTGGCAGTATACGAGCGTGATAACGGTTTGCCAAAGATAAC CGTGTACCAGCTCCCGCCACCGAACGAAGCACTTACAAGCCTTGAAGGTGGTCGGACAGTTGACTTTGTCGACCCTGTATACATGGTCTCTCCTGGAGAA TCATCTTACACATCCACCATTCTGAGGTTTTCTTATAGTTCGTTACGGACACCTTCCACTGTGTTTGATTATGACATGAACACTGGCGTCTCTGTCCCTA AGAAGGTTGAAACTGTATTGGGAGGTTTCGATTCGTCGAATTATGCCATCGAGAGAAAATGGGCTACTGGGTTAGACGGCACTCGGATTCCTATGTCGAT TGTCTACCATAAGGGTCTTGTTAACCTTGATGGCTCTGGCCCGTTATTGCTTTACGGCTATGGTTCGTATGAGAGCTGCGTAGATACATCGTTCAAGGCT TCGAGACTCGCTTTACTAGATCGAGGGTTCGTCTTTTCAATCGCTCATGTTCGTGGAGGCGGTGAGATGGGGAGGCAGTGGTACGAGAATGGGAAGTTCT TCAAGAAGAAGAATACTTTCACAGATTTCATTGCCTGCGCTGAGTATTTAGTTGAGAATAACTACTGCTCAAGGAAGAAGTTGTGCATTGATGGTAGAAG TGCTGGTGGGTTGCTAATCGGTTCGGTTTTGAACATGAGGCCAGATTTGTTCAAGGTTGCTTATGTTGGAGTCCCTTTTGTTGATGTTGTCACCACAATG CTTGATCCGACCATTCCTCTTACAACTGCAGAATGGGAGGAATGGGGAGATCCTCGCGAGGAGGAATTCTATCGTTACATGAAGTCTTACTCCCCTGTGG ACAATGTTGTTGCGCAGAACTATCCCCACATTCTTGTCACAACTGGTTTACATGATCCGCGAGTTCTGTATTCAGAGCCAGCGAAGTACGTGGCGAAACT GAGGGATTTGAAAACAGACAGTAACATGCTGTTGTTCAAATGCTATTTTGGTGCTGGACACAAGTCGAAATCCGGAAGATTCCAGAGGCTGCAGCAAGAT GCATTTATATATGCTTTCATCATGAAGGCTCTACAAATGATCCCAGCCAATGACTAG
AA sequence Show only first row Show all	>Lus10032920 pacid=23160454 polypeptide=Lus10032920 locus=Lus10032920.g ID=Lus10032920.BGIv1.0 annot-version=v1.0 MHIATSSETPPETLSPPVAKKVEHAMEMFGDVRVDNYYWLRDDSRSDPQVLSYLHQENVYTDFIMADTKGFEEKLYQELRGRIKEDDTSAPIRKGDYYYN TKTLQGKEYVQHCRRRSISGPHDDISVHDVMTCDAPEQVLLDENVKAQPHQYYTIGAFKVSPNQKLFSYSEDTKGNENYTVHVVDVETLVPVEKPLINVA TALQWAGDDALAYVTRDDALRSYKVWLHRLGTDQSTDSCLHHEKDEKFSLSLQLSGSHKYLFIASNSKTTGFVFYVDVTKLEEGARVLTTCVTGIDTSAA SHGGNHFFIIRRSDQVFNSELLACPVDDISSISVLIPHRDSIKLKEMQLFANHLAVYERDNGLPKITVYQLPPPNEALTSLEGGRTVDFVDPVYMVSPGE SSYTSTILRFSYSSLRTPSTVFDYDMNTGVSVPKKVETVLGGFDSSNYAIERKWATGLDGTRIPMSIVYHKGLVNLDGSGPLLLYGYGSYESCVDTSFKA SRLALLDRGFVFSIAHVRGGGEMGRQWYENGKFFKKKNTFTDFIACAEYLVENNYCSRKKLCIDGRSAGGLLIGSVLNMRPDLFKVAYVGVPFVDVVTTM LDPTIPLTTAEWEEWGDPREEEFYRYMKSYSPVDNVVAQNYPHILVTTGLHDPRVLYSEPAKYVAKLRDLKTDSNMLLFKCYFGAGHKSKSGRFQRLQQD AFIYAFIMKALQMIPAND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50380			Prolyl oligopeptidase family p...		Lus10032920 [exp]	0	1

Compare expression of checked genes

Lus10032920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.