Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16040 206 / 8e-66 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015585 [exp] 489 / 4e-176 AT1G16040 192 / 3e-60 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G184701 [exp] 291 / 5e-99 AT1G16040 239 / 4e-80 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06699 [flax] [poplar] PIG-F GPI biosynthesis protein family Pig-F
Representative CDS sequence Show only first row Show all	>Lus10032921 pacid=23160432 polypeptide=Lus10032921 locus=Lus10032921.g ID=Lus10032921.BGIv1.0 annot-version=v1.0 ATGTTGCGATTTGGAGTCGCTTCGCACTTCGCAGAACCAATTCTGCAGCTCAGTTCTTCGAAACATCTCCCCACTCTGTTCTCCGCCGTTCATCGGTGGT CAGTTCTCCGGCCTGTCGTTGCTTCTCCGTCCCGTCTCTTTCGGTCGTTGCTCCACTCCAGCTGTCGGCTCTCTGCTCGCGGCGTCGGAGCTCCAGCCAC CGCGTTTCTGCACAAGCTCTCCAGCATGAAGGATAAGAAAAAGAACAGAATACGTGAAGAAGCTAATGCGCCAGTTGAAGTGTCTGAATGCAATGTGTCA ATTCTGCAAGCATTATTGGTCCATGCAATATGTGGACTTGGTTTAGCTATCGGATTGTGGATATCCCACCGTTGGTACTCCATCAATCTTGTTTCTCATC CATCAGACACCATTTTCATGATTTGGATTGTCGAGACTCCAGCTGCGTTACTTCTTTATAGTTACTTCCGGAAAGGCCAAGAAAAACATTCGTTCTTGAG GGCTGTTGGAAGAGGCATATTGGCTTTTCCTATTGGAGCTTTGATCCATGCTGCTGCAGCTATTGTCTTAGGCGCACCTGTTGGCTCTCTGTACTTGTTG AGGACAATTAACTGGTCTCTTCTGATGTCATCACTCACTGTTGTTCCTGTAGCTTCAGTATTTGGTTCATCGTGGACAGATTGGCAACGGTTATTAGCGT GTACAAAGCCAAATGGGTCATTGGAATATATGCTTTGCATACCAGCACATGGTGCAGTAATTGGAGCCTGGTTAGGAGCTTGGCCTATGCCACTCGACTG GGAAAGACCATGGCAGGAATGGCCAATCTGCGTTACGTACGGCACTTTAGCAGGTTACGTGATGGGAATGGTGGCATCATTTGTCTTGGTGCTTGCTACC AGTGCTGGAGCATCAAGACGACGTCGTCTGAAAGGAGATTAG
AA sequence Show only first row Show all	>Lus10032921 pacid=23160432 polypeptide=Lus10032921 locus=Lus10032921.g ID=Lus10032921.BGIv1.0 annot-version=v1.0 MLRFGVASHFAEPILQLSSSKHLPTLFSAVHRWSVLRPVVASPSRLFRSLLHSSCRLSARGVGAPATAFLHKLSSMKDKKKNRIREEANAPVEVSECNVS ILQALLVHAICGLGLAIGLWISHRWYSINLVSHPSDTIFMIWIVETPAALLLYSYFRKGQEKHSFLRAVGRGILAFPIGALIHAAAAIVLGAPVGSLYLL RTINWSLLMSSLTVVPVASVFGSSWTDWQRLLACTKPNGSLEYMLCIPAHGAVIGAWLGAWPMPLDWERPWQEWPICVTYGTLAGYVMGMVASFVLVLAT SAGASRRRRLKGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16040			unknown protein		Lus10032921 [exp]	0	1
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10042271 [exp]	3.3	0.7460
AT3G19508			unknown protein		Lus10013875 [exp]	9.5	0.7007
AT4G18905			Transducin/WD40 repeat-like su...		Lus10004536 [exp]	17.2	0.6917
AT1G32210		ATDAD1	DEFENDER AGAINST APOPTOTIC DEA...		Lus10010413 [exp]	22.5	0.7025
AT3G60480			unknown protein		Lus10034728 [exp]	23.5	0.6911
AT4G10620			P-loop containing nucleoside t...		Lus10000122 [exp]	27.9	0.6551
AT5G58030			Transport protein particle (TR...		Lus10036292 [exp]	31.0	0.6842
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	31.1	0.6767
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10028205 [exp]	31.4	0.6198
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10038195 [exp]	36.7	0.6572

Compare expression of checked genes

Lus10032921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.