Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26540 491 / 1e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 332 / 7e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 263 / 2e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15130 252 / 1e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16610 251 / 1e-74 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G22690 252 / 1e-73 unknown protein AT3G53360 251 / 1e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 246 / 2e-72 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 245 / 2e-71 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 242 / 2e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015584 [exp] 784 / 0 AT3G26540 745 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 312 / 9e-97 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 308 / 4e-96 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 286 / 8e-87 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 282 / 3e-85 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 258 / 8e-77 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 258 / 2e-76 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018278 [exp] 252 / 2e-75 AT4G14050 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 255 / 3e-75 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G075300 [exp] 565 / 0 AT3G26540 815 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 310 / 2e-96 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 276 / 2e-82 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 275 / 2e-82 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G244500 [exp] 272 / 3e-82 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083700 [exp] 262 / 2e-77 AT3G22690 1050 / 0.0 unknown protein Potri.003G191000 [exp] 260 / 7e-77 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G245300 [exp] 257 / 1e-75 AT3G22690 570 / 0.0 unknown protein Potri.007G085500 [exp] 253 / 1e-74 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G161800 [exp] 251 / 5e-74 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10032922 pacid=23160384 polypeptide=Lus10032922 locus=Lus10032922.g ID=Lus10032922.BGIv1.0 annot-version=v1.0 ATGAGCAAGGCTTCTATGTTATTTGGCTTGCTCGGCAACGCTACCCAGAAGCTCCGATTCCAAGAACCAACCTCATCAAGAGAATTAACCAACCTAATCT CATCCCATCTCCGCTCCAATCGCCTCCAGACAGCCGTCTCCATTCTGTTCGGCTCTCCTTACCCAGTCTCGTTCCCCCTTTACGCCAATCTCTTCCAGCT CTGTGCTTCTCAGCGCGCCATTGTCGAGGCCCGGAAAGTCGAGTTCCATCTAATTACCTTTGAACCTAACCCACCTACCTTCTTATTGAACCGTGCTATT GAGACTTATGGCAAATGTGGTTGCTTACCCGATGCCGTCGACCTGTTCGAGGAAATGCCTAAGAGAGACGGTGGCTCTTGGAATGCTGTCATTAATGCAT GCACGCAATGCGGGAGTCCCAACCAAGCATTGAGCTTGTTTAAGGATATGAGGAGACTTGGATGTTCACCCAATGAGATCACGTTCGCTGGTGTTCTGGG ATCTTGTGGGGATTGCTTGGCACTTCATTTTTCAATGCAAACTCATGGGCTTATAATGAAATGTGGGTTTTGTGGTAACGTGATTTTGGAGACTTCGCTT ATAGATGCTTATGGAAAGTGTAATGCTATGAGGGAAGCGAGGAGGATGTCTGATGAGATTGAGTTTCCTAATGAAGTTACGTGGAATGTCATTCTAAGAC GATATCTTGAGGTCGGGGATTGTAGGGAGGCGATAGGTATGTTTTGCCAGATGCTACATACGGATGTTAAACCATTGAGTTTTACCGTTTCTAGTGTCAT TGTTGCTTGTTCGGGTATACGTGCAGTTCGGGAGGGGATGCAGATACATGGAATTGCAACTAGGAAAATGTTTCTGGATAGCGAGGTGGTTTTGAGTTCT CTCATTGATATGTATGTTAAGTGTGGAAGATTAGAGAGTGCTCGACGGGTTTTCAATCAGCCTGGCTTGAGAGATTTGATTTCCTGGACTTCTATTGTGT CTGGATATGCAATGAATGGCAAAACGAGAGAGGCAAGAGAACTTTTTGATAATATGCCTGAACGGAATACTTTCTCTTGGAATGGTATGTTGGCTGGATA CACTCGCTCCCTTCAGTGGGAAGATGCCTTGGATTTTGTTATTCTGATGCGAAGTAAAATTGATGATTTTGACCATGTCACTATTACATTGTTGCTCAAT GTGTGTGCTGGGCTTTCAGATGTTGAAATGGGAAAACAAGTGCATTGCTTTACTTACCGCCAGGATCTGCATTCCAATGTTCTTGTTGGAAATGCTCTTT TGGGAGCTTTGGTCAACATGTACTCTAAATGTAATTGTGTTGTATATGCTATGCTGCTCTTTAGGCAAGCAGCTTTACGTGATCTGCTTCTTTGGAACAC CATAATTTTGGGGTTCTCTCGCAGTGGAAAGGGTAAGGAAGCTATTCAGTTGTTTGATTTTATGCGTCGGGAAGAAGTAAGACCAGACCATGTCACGATG CTGGGAATCTTGGAAGCTTGTATACACGAAGGCGATGTTGAGCTGGCCCTCCGCTATTTTCATTCAATGAGCAATGATTATATTATTTTACCTCGAGTGG AGCACTATGACTGCATAATAGAGCTTTTATGTCAGTATGGAAGCATGATTCAGCTTGAGGACTTTCTTGACAAGTTGCCATTTGATCCCACTGTTCCTAT GTTGACAAGGGTTGTTAATGCTTGTAGACGGAACAATTTCCAAAAGTTAGGTGAATGGGCTGCTGGCCGACTGAATGTATTCAACAACTCATGA
AA sequence Show only first row Show all	>Lus10032922 pacid=23160384 polypeptide=Lus10032922 locus=Lus10032922.g ID=Lus10032922.BGIv1.0 annot-version=v1.0 MSKASMLFGLLGNATQKLRFQEPTSSRELTNLISSHLRSNRLQTAVSILFGSPYPVSFPLYANLFQLCASQRAIVEARKVEFHLITFEPNPPTFLLNRAI ETYGKCGCLPDAVDLFEEMPKRDGGSWNAVINACTQCGSPNQALSLFKDMRRLGCSPNEITFAGVLGSCGDCLALHFSMQTHGLIMKCGFCGNVILETSL IDAYGKCNAMREARRMSDEIEFPNEVTWNVILRRYLEVGDCREAIGMFCQMLHTDVKPLSFTVSSVIVACSGIRAVREGMQIHGIATRKMFLDSEVVLSS LIDMYVKCGRLESARRVFNQPGLRDLISWTSIVSGYAMNGKTREARELFDNMPERNTFSWNGMLAGYTRSLQWEDALDFVILMRSKIDDFDHVTITLLLN VCAGLSDVEMGKQVHCFTYRQDLHSNVLVGNALLGALVNMYSKCNCVVYAMLLFRQAALRDLLLWNTIILGFSRSGKGKEAIQLFDFMRREEVRPDHVTM LGILEACIHEGDVELALRYFHSMSNDYIILPRVEHYDCIIELLCQYGSMIQLEDFLDKLPFDPTVPMLTRVVNACRRNNFQKLGEWAAGRLNVFNNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10032922 [exp]	0	1
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10014113 [exp]	3.3	0.8967
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	3.9	0.8886
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10013264 [exp]	4.2	0.8873
AT2G46050			Pentatricopeptide repeat (PPR-...		Lus10036375 [exp]	4.6	0.8888
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10029806 [exp]	6.0	0.8909
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Lus10034421 [exp]	6.6	0.8742
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	8.9	0.8886
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	10.0	0.8773
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10013972 [exp]	10.2	0.8665
AT5G40520			unknown protein		Lus10025568 [exp]	10.9	0.8164

Compare expression of checked genes

Lus10032922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.