Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24580 243 / 5e-79 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT5G50740 108 / 2e-27 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT5G63530 104 / 2e-25 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT3G02960 89 / 1e-20 Heavy metal transport/detoxification superfamily protein (.1) AT1G29000 85 / 7e-19 Heavy metal transport/detoxification superfamily protein (.1) AT2G36950 85 / 2e-18 Heavy metal transport/detoxification superfamily protein (.1) AT5G03380 73 / 2e-14 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G60800 69 / 5e-13 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G28090 64 / 1e-11 Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 57 / 9e-10 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015583 [exp] 363 / 5e-126 AT5G24580 314 / 6e-107 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10038785 [exp] 104 / 3e-26 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10039074 [exp] 103 / 7e-26 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10012867 [exp] 99 / 2e-22 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10022617 [exp] 88 / 3e-19 AT2G36950 178 / 2e-51 Heavy metal transport/detoxification superfamily protein (.1) Lus10021516 [exp] 87 / 5e-19 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014421 [exp] 87 / 9e-19 AT5G03380 193 / 5e-57 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10037044 [exp] 77 / 2e-16 AT3G02960 137 / 6e-40 Heavy metal transport/detoxification superfamily protein (.1) Lus10016133 [exp] 76 / 5e-15 AT5G60800 175 / 3e-52 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G007300 [exp] 265 / 1e-87 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.015G003900 [exp] 255 / 7e-84 AT5G24580 247 / 1e-80 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.016G006600 [exp] 129 / 3e-35 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.006G006100 [exp] 112 / 3e-29 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.015G099500 [exp] 106 / 3e-26 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G101400 [exp] 100 / 6e-24 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) Potri.016G017600 [exp] 88 / 1e-20 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.014G178800 [exp] 87 / 8e-20 AT1G29000 115 / 1e-30 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G007600 [exp] 86 / 5e-19 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G093100 [exp] 84 / 3e-18 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10032923 pacid=23160448 polypeptide=Lus10032923 locus=Lus10032923.g ID=Lus10032923.BGIv1.0 annot-version=v1.0 ATGGGTGCGGAAGCTAAACAGGAAGAAGCTAAGCCAGAGGAGGTCAAGCAGCCAGAGGAGGTCAAGCAGCCAGAGGAGGTGAAACAAGAAGCAAAAGAAG AACCACCGAAAGAAGAGGCGAAAGAAGAGAAGCCAGCAGAGGAAAAGAAGGAGGAGGAAGCTAAGCCCCCTCCTCTTTTCATTCTGTTTGTGGACCTGCA TTGTGTTGGATGTGCCAAGAAGATTGAGAGATCCCTCTTGAAAATTAGAGGCGTGGAGGGAGTAACAATAGATATGGGTCAGAACCAAGTGACCATCAAA GGAATAGTGGAGCCTGAAGCTGTTTGCAACATGATAAGGAAGAAAACTAAGAGAAGAGCTCAAGTGTTATCTCCATTGCCTGAAACTGAGGGTGAACCCA TTCCTCAAGTTGTCAATTCACAGGCTACTGGACCAATAACAGTGGAGCTCAACATAAACATGCACTGTGAGGCCTGCGCTGAGCAGCTCAAGAAAAAGAT ACTCAAGATGAGAGGAGTGCAAACAGTAGTAACAGAGCTACAATCAGGGAAAGTCACAGTGACAGGAACCATGGACGCAAACAAGCTGGTGGAATACGTT TACAGGCGCACCAAGAAGCAAGCCAAGATCGTGCCTCAACCGGAACCTGAAAAGCCGGAAGAGAAGAAAGAAGAAGCAGCAGCAGGTGAGAATGGGGAGA AGAAAGAAGAGGAGAAGCCAGCAGGAACAGAAGAAGAAGGCAAGAAAGAAGAAGGCGGCGGTGAGGCCCCACCACCAGCAGATGAAAGTAAGGAGCACGA AGCAATGAAGGAAATGGCGGCCATGGTTGAAGAAGAAAACATGAAGAGGATGATGTACTACCACCAGTATCAGCCACTGTATGTGATCGAGAGAATCCCA CCACCTCAGCTCTTCAGCGACGAGAACCCAAATGCCTGTTCCATTTCATAG
AA sequence Show only first row Show all	>Lus10032923 pacid=23160448 polypeptide=Lus10032923 locus=Lus10032923.g ID=Lus10032923.BGIv1.0 annot-version=v1.0 MGAEAKQEEAKPEEVKQPEEVKQPEEVKQEAKEEPPKEEAKEEKPAEEKKEEEAKPPPLFILFVDLHCVGCAKKIERSLLKIRGVEGVTIDMGQNQVTIK GIVEPEAVCNMIRKKTKRRAQVLSPLPETEGEPIPQVVNSQATGPITVELNINMHCEACAEQLKKKILKMRGVQTVVTELQSGKVTVTGTMDANKLVEYV YRRTKKQAKIVPQPEPEKPEEKKEEAAAGENGEKKEEEKPAGTEEEGKKEEGGGEAPPPADESKEHEAMKEMAAMVEEENMKRMMYYHQYQPLYVIERIP PPQLFSDENPNACSIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24580			Heavy metal transport/detoxifi...		Lus10032923 [exp]	0	1
AT5G24580			Heavy metal transport/detoxifi...		Lus10015583 [exp]	1.0	0.9466
AT4G16695			unknown protein		Lus10028968 [exp]	1.7	0.8695
AT2G22590			UDP-Glycosyltransferase superf...		Lus10012726 [exp]	5.7	0.8518
AT1G21830			unknown protein		Lus10018177 [exp]	7.1	0.8724
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040745 [exp]	13.4	0.8321
AT1G68330			unknown protein		Lus10034341 [exp]	17.0	0.8060
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	17.7	0.8414
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	18.8	0.8451
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	23.8	0.8395
AT1G08800			Protein of unknown function, D...		Lus10018782 [exp]	24.7	0.8030

Compare expression of checked genes

Lus10032923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.