Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27590 116 / 8e-33 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G02600 56 / 4e-09 NPCC6, NAKR1 nuclear-enriched phloem companion cell gene 6, SODIUM POTASSIUM ROOT DEFECTIVE 1, Heavy metal transport/detoxification superfamily protein (.1.2) AT3G56891 54 / 6e-09 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 52 / 1e-08 Heavy metal transport/detoxification superfamily protein (.1) AT3G53530 53 / 3e-08 NAKR3 SODIUM POTASSIUM ROOT DEFECTIVE 3, Chloroplast-targeted copper chaperone protein (.1.2) AT2G18196 52 / 3e-08 Heavy metal transport/detoxification superfamily protein (.1) AT2G37390 51 / 9e-08 NAKR2 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) AT1G29100 48 / 4e-07 Heavy metal transport/detoxification superfamily protein (.1) AT5G05365 45 / 9e-07 Heavy metal transport/detoxification superfamily protein (.1) AT3G24450 47 / 1e-06 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024435 [exp] 58 / 6e-10 AT2G37390 144 / 2e-41 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Lus10033250 [exp] 57 / 9e-10 AT2G18196 251 / 3e-86 Heavy metal transport/detoxification superfamily protein (.1) Lus10025294 [exp] 58 / 1e-09 AT2G37390 141 / 3e-40 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Lus10008284 [exp] 56 / 1e-09 AT2G18196 246 / 4e-84 Heavy metal transport/detoxification superfamily protein (.1) Lus10033469 [exp] 56 / 6e-09 AT5G27690 56 / 2e-09 Heavy metal transport/detoxification superfamily protein (.1) Lus10016812 [exp] 51 / 5e-08 AT4G39700 181 / 3e-59 Heavy metal transport/detoxification superfamily protein (.1) Lus10020906 [exp] 52 / 7e-08 AT5G27690 50 / 1e-06 Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 51 / 7e-08 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1) Lus10016436 [exp] 51 / 7e-08 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G007200 [exp] 122 / 2e-35 AT4G27590 137 / 2e-42 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.015G003800 [exp] 120 / 1e-34 AT4G27590 141 / 7e-44 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.001G452400 [exp] 57 / 4e-10 AT2G18196 256 / 3e-88 Heavy metal transport/detoxification superfamily protein (.1) Potri.011G149500 [exp] 56 / 1e-09 AT2G18196 257 / 9e-89 Heavy metal transport/detoxification superfamily protein (.1) Potri.011G065600 [exp] 54 / 5e-09 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G005300 [exp] 55 / 8e-09 AT4G39700 55 / 3e-09 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G213900 [exp] 55 / 9e-09 AT2G37390 127 / 2e-35 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Potri.016G080400 [exp] 53 / 2e-08 AT2G37390 133 / 2e-37 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Potri.002G092200 [exp] 50 / 6e-08 AT4G08570 193 / 3e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G128400 [exp] 52 / 7e-08 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10032924 pacid=23160370 polypeptide=Lus10032924 locus=Lus10032924.g ID=Lus10032924.BGIv1.0 annot-version=v1.0 ATGACGATGCAAATTGTAGTTGTGGAAGAAGGAGAGAAGAGGAAGGTGGAAGCACAGTTGGTGGAGATGAAGGTTCCTCTCTACTCTTATGGCTGTGTCA AGAAAATCAACAAGGCCTTGTCCCATCTCAAAGGAATATATTCGGTGAAGGTAGACTACTTCCAACAGAAGGTGACAGTGTGGGGGATCTGCAACAAATA CGACGTCCTAGCAGCCATCAAGAACAAGAGAAAAGCTGCTCGGTTTTGGTACCCAGATGACCCAAATGATACTAGTAATATTTATGAACAAGATCACCAA CAGGGTAATGAAAAGCTTGAGGAAATATCATCATCATCACCATCATTAGTAGTGGGCGTGGATGTGGAGCAACGAGGACAATCCTCACTGATAAAGTCGG CATCGAGCCGTGGTAATTACTACAGGTTCAGCCTTAGTAAGTCACGATCTCTAAGCTTGAAGCTTTTGGTAGCGGCCGCGGCGGAGCTATTGGAAGGATA CACGGAGGCGATCGCCAGACTCACGGTTCTTATCTGTCAATTCCCGGCGGGGAGGCGAAACAACGTCGTCGGGAATGGTTATGTCGATTTCCGGTTCTTG ACTTTTCCTCCAACCGCCCCCCAACATTCTTCCTCTACTAATTTCATGGTTTATTTCTGA
AA sequence Show only first row Show all	>Lus10032924 pacid=23160370 polypeptide=Lus10032924 locus=Lus10032924.g ID=Lus10032924.BGIv1.0 annot-version=v1.0 MTMQIVVVEEGEKRKVEAQLVEMKVPLYSYGCVKKINKALSHLKGIYSVKVDYFQQKVTVWGICNKYDVLAAIKNKRKAARFWYPDDPNDTSNIYEQDHQ QGNEKLEEISSSSPSLVVGVDVEQRGQSSLIKSASSRGNYYRFSLSKSRSLSLKLLVAAAAELLEGYTEAIARLTVLICQFPAGRRNNVVGNGYVDFRFL TFPPTAPQHSSSTNFMVYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27590			Heavy metal transport/detoxifi...		Lus10032924 [exp]	0	1
					Lus10003607 [exp]	2.8	0.8276
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10040305 [exp]	4.0	0.8212
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10024424 [exp]	4.2	0.8275
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10003259 [exp]	7.7	0.7742
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10018662 [exp]	8.9	0.7811
AT4G05220			Late embryogenesis abundant (L...		Lus10006755 [exp]	9.7	0.8324
AT3G44716			unknown protein		Lus10009406 [exp]	10.4	0.7777
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10041961 [exp]	11.4	0.7773
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10019863 [exp]	17.9	0.8093
AT5G44005			unknown protein		Lus10008219 [exp]	17.9	0.7347

Compare expression of checked genes

Lus10032924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.