Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49490 81 / 5e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015581 [exp] 1321 / 0 AT3G49490 91 / 5e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003700 [exp] 265 / 5e-72 AT3G49490 107 / 2e-23 unknown protein Potri.012G007000 [exp] 238 / 1e-63 AT3G49490 104 / 2e-22 unknown protein Potri.001G452300 [exp] 59 / 3e-08 AT1G33050 63 / 6e-10 unknown protein Potri.003G206701 [exp] 52 / 7e-08 AT3G49490 49 / 4e-08 unknown protein Potri.002G230100 [exp] 48 / 1e-06 AT3G49490 45 / 6e-07 unknown protein Potri.004G080501 [exp] 44 / 4e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032925 pacid=23160395 polypeptide=Lus10032925 locus=Lus10032925.g ID=Lus10032925.BGIv1.0 annot-version=v1.0 ATGATGATGATGGGTTCTGCTTATTATGGAAATGGAGGATCGTCGTCTTCCTCTTCAAGCTTATCCGCCGCAGCCCCGCCTTTTACTGTCGATCGATCTG TTGCGAAACCCTTCTCCCCACTTATTGACTTCACTGACCAATCTTATCATCATCATCCTGTTCCTAAATTGAATTCAACTCTGCAGCATAGTAATTGGCT TCCATCCAACTCCACTACTCATGACTTCTTCCCCACTTCTGCCACTGAATTTGATCCTATCTCTTCCTCCTCAGTTGACTACACCTACTCCCCTTCAGTT CACGATGACGTTCACTATTCCCTTCTGCCGGATACTCTCCCTGATCCCTCCAATCCCTACTACCAGCCTTTTGTTTCTTCCAATTCCCGCAACAAAGCCA GTTCGAACCTTCCTCCTTCCCAATCTGGTTTGTCTAGCACCCATGTGGTGACACCGCCTCGACCTTCTGGTGGTGATAGTTTTACTCAATCTCCATTCGA CCACTCACTCCAATGGAGTGGTATGTGGGATGGACTTTCAGATTGGCAGCAGAGCAATCAAGTGCAACGAGATGGGTCTTTTGATTGTAAGGACAATTAT ATGAATCAAGGTTTTTATGCACTCAAGAATGTCATTTATGATGAAGAATTCAATGGCATTGATGTCGGAATCCAGAAACATGTGAAGCATGCTGATTCTG TACAGAAAGATTCCAATTCCTTCCTTGGTGAAAATCCAGAGTTCTTACGTGCTGACTATTCAACAGTGGTGACATGCACATCGGCTCTATCAGTTCCAAA ACCATATTCTAAGTTCCCATACTTAGCAGGTGCCAGTTCTGTAGGTTATGAAAGTCCTCTCACTGTGTCGATTGATAAGTGCTCAAGGAAACGAAGTCCT AGCTCAATTGATGCTCATTTTACAGCGAAGTTGCCTTCTACTGTCACTATTAGACCACCACATAAGGAAAGGTTCTCTCTCAGAACTATGAGCCCCCAAG TAAAAATTTCCAGTCGTGATAGTCCTTCCACTGTTAAAGAGAACGATCAATGTAGAAAGGCTGAAAGCAAACCTTATTTTGATGCTACGCAACTCAGGTT TCAATTGGGAAAAAGTGATGACGAACAAACAAGTAATGCAAGTGGTACAGCAGAAGGCCACCCTGTAGCAAAACCCAGGGTGCCAGTTCGTCAGGTGTAT CCAGATGGTTTCAGTGTGGCAGTTGATGATAACAACACCCTGAACTCTGGTGATACTTTTGCTGAAAGCTCGGATCATCACAGTTCTGCTTTGGACTCCC CATGTTGGAAAGGGGCTACAGTCTCTCACTGGTCCACATTTGAAGTGGTCAGGCCATCTAATATCAGAACGGTGGAAGATCTGAGCAGTACAAATCTTTT CGGATCTCAAATTTCTCCTTTCAAAACCAATGCCACTGATGGAACCGATCCTCAAAAGATAGAAGTACGTGAGGCGGATGATTATACCAGGGGCCCAGAA TATGGTTCAGCTTCTTTTGAGGGACTCACAGGTACTAACAGGTTTTCAGATGAAGGATTTGGTGGTTCTGTGAAATTTCAGGGTCAAAATGCAGCAGTTA GCTGCAGCACTGGGGTTTCCCTCTATGGCGATATCCATGGATCCATCAAACAAGACAGCCTGCATGATCAATCAGTGGAGATTTCTGATGGTGAACCTCC TAAGAAACAAATTACTGAGGAAGGCCAAAGTACAGCTGTAAAACATTCAGGGTTTACTGATGGAAGCCTTCTTACTAAGACTGATGATCTTGAATATCGT GCATCTCATGTGCCATACCATGCTGTAGATCATGTACTACTTTCACCCTCTTCAGCAGAACTTAGCCCTTCTGAGTTAATGCAGCCGAGGGGCCAATCAG CCCCAGATGTGTATATCCCAACACTGGTTAATTCAATGCGTAACCTCTCAGAGTTGCTTCTCTTTCACTGTTCAAATGAGGCTTGTGAACTGAGGCAAGA AGATCGTGAGACTCTGAAGGAGGTGGTCAATAATATCCTCTCAAGCGCAATGAACAATGCAAATGGCCTAGCTCCCTTGGAAAAGTTATTGACTCCAGAG AGACAAAATCAACTACATGCACTTAGAAAGGTGTATCCAGATGGTTTCAGTGTGGCAGTTGATGATAACAACACCCTGAACTCTGGTGATACTTTTGCTG AAAGCTCGGATCATCACAGTTCTGCTTTGGACTCCCCATGTTGGAAAGGGGCTACAGTCTCTCACTGGTCCACATTTGAAGTGGTCAGGCCATCTAATAT CAGAACGGTGGAAGATCTGAGCAGTACAAATCTTTTCGGATCTCAAATTTCTCCTTTCAAAACCAATGCCACTGATGGAACCGATCCTCAAAAGATAGAA GTACGTGAGGCGGATGATTATACCAGGGGCCCAGAATATGGTTCAGCTTCTTTTGAGGGACTCACAGGTACTAACAGGTTTTCAGATGAAGGATTTGGTG GTTCTGTGAAATTTCAGGGTCAAAATGCAGCAGTTAGTTGCAGCACTGGGGTTTCCCTCTTTGGCGATATCCATGGGTCCATCACACAAGACAGCCTGAA TGATCAATCAGTGGAGAATTCTGATGGTGAACCTCCTAAGAAACAAATTACTGAGGAAGGCCAAAGTACAGCTGTAAAACATTCAGGGTTTACTGATGGA AGCCTTCTTACTAAGACTGATGATCTTGAATATCGTGCATCTCATGTGCCATACCATGCTGTAGATCATGTACTACTTTCACCCTCTTCAGCAGAACTTA GCCCTTCTGAGTTAATGCAGCCGAGGGGCCAATCAGCCCCAGATGTGTATATCCCAACACTGGTTAATTCAATGCGTAACCTCTCAGAGTTGCTTCTCTT TCGCTGTTCAAATGAGGCTTGTGAACTGAGGCAAGAAGATCGTGAGACTCTGAAGGAGGTGGTCAATAATATCCTCTCAAGCGCAATGAACAATGCAAAT GGCCTAGCTCCCTTGGAAAAGTTATTGACTCCAGAGAGACAAAATCAACTACATGCACTTAGAAAGGGTTCCAAAATGGCTGTGCCTCAAGTTTCATCTC CAGTCAAAGTCCAACCTCTCAAGGAGGGTCATAGCACTTTAGATGATATCAAAGATGGGAAGCTACCCAACCTGAGTTCTGAAAGTGCTGCTACCGAGAT AGAGGAGCATAACAGCACGATGCAGGCTCTGAAGAAGATTCTTGCTGAGAACTTACATGATGAGGACGAATCTCAACCAGAAACACTTTTGTATAAAAAT CTGTGGCTTGAGGCTGAAGCACAGCTGTGCTCTGTTAATCATGTAGCTCGTTATAATCGGATGAAGTTTGAGATGGAGAAATGCCATTCCCAGCAGCCTA ATGTTGTATCCCAGAATACAATGTCGATGGGGATGTTTCCAAGACCGGCGGTTTCTTCTGGCAGTTTCTGTAAGGGCACTTTAAGATTTGATATGAAGTC CCAACAAATCTCGGATGGTCCTAATTCAGATGTATCAGTCTCAAGCGGAAATAGCAATCGAGATGATACAGTTGCTAGATCCCAGGCCTTTACACCCCCT TCTATCGAACTTGTAACTACAAATGAAGATGATAAGGAGGCTGGCAAAGCAAACAAAGAAATAAAGGACAGTACAAAGGCTGATGTGTTCATGCAGGATA CCCCCTTGTCAAGTCGAAGTACCCCCATGGATGATGTGGATGCTTCTGTGATGGCAAGATTTGAAATCCTGAGACACCGAGCTGACAACTTGAGCTCCAA AGTAACGGAAGAAGACCAGCCAGAATGTGCTGGTCTTGCATACCCATTTGTAAGAAGCCTGCAGCCAACTTCTGAAGATGTTGCGGAGAAAACAATTATG AATGGAAAAGTGGAGACGATCTTGCAGAATAATTCAGTCAAGTCCATGGAAGGCCAGCTGCTTGTTAAGGAACATTTCAATCTGCAGAACGGAAATGAAG CCCCTACAAGGCCAAAATCTAATGATGCAACCTATATGGAGTCTGGTCTTGTTCCTCCCCTGCAAGGACCTAACTTTTGCAGTAACAATCATCCTCCTGA TGTGAGTGCTCGATTTGCTATGCTGAAGACCCGAGCAGAGAAACAAGGTTCCCCAAGCTCGCGGGATGTGGAAAAATCATCCAGTTCTAAGACTTCTCCT GTTCGGAACATGGTTGATGTCTTGGACACCCAAAAGCCAAAATCACTTGTCCACGATCATCTGATGTCAGGAACTGCAAGCCATATATCTGATGCTGAAG CATTGTATAGGGATCAATTAGAAACCCTGAAACACATGGTTGACACCAGAGCTCCTGAATCCGAAGCATGGCCGCCCGGAGGCCCGAGAAGGAATTGGCC GTTTAATTCGGATGGATCCCTCGGCAGAATGGAAGATGATGATGCACTGATTAGTGAGGATAAATCTGATGTGGAGGCGTTCCATTCATGTGCCAGATAT GACCCTGTGATTCTGCACCCCATGGCAAATAGGCGCAGTGGTGATCAGTCTCATGCGAGCTGGTATGAGAGCCCTTCATCAGACTGGGAACATGTACTAA AGGAGGAAGTTGCAGGAAAACCCTGCTAA
AA sequence Show only first row Show all	>Lus10032925 pacid=23160395 polypeptide=Lus10032925 locus=Lus10032925.g ID=Lus10032925.BGIv1.0 annot-version=v1.0 MMMMGSAYYGNGGSSSSSSSLSAAAPPFTVDRSVAKPFSPLIDFTDQSYHHHPVPKLNSTLQHSNWLPSNSTTHDFFPTSATEFDPISSSSVDYTYSPSV HDDVHYSLLPDTLPDPSNPYYQPFVSSNSRNKASSNLPPSQSGLSSTHVVTPPRPSGGDSFTQSPFDHSLQWSGMWDGLSDWQQSNQVQRDGSFDCKDNY MNQGFYALKNVIYDEEFNGIDVGIQKHVKHADSVQKDSNSFLGENPEFLRADYSTVVTCTSALSVPKPYSKFPYLAGASSVGYESPLTVSIDKCSRKRSP SSIDAHFTAKLPSTVTIRPPHKERFSLRTMSPQVKISSRDSPSTVKENDQCRKAESKPYFDATQLRFQLGKSDDEQTSNASGTAEGHPVAKPRVPVRQVY PDGFSVAVDDNNTLNSGDTFAESSDHHSSALDSPCWKGATVSHWSTFEVVRPSNIRTVEDLSSTNLFGSQISPFKTNATDGTDPQKIEVREADDYTRGPE YGSASFEGLTGTNRFSDEGFGGSVKFQGQNAAVSCSTGVSLYGDIHGSIKQDSLHDQSVEISDGEPPKKQITEEGQSTAVKHSGFTDGSLLTKTDDLEYR ASHVPYHAVDHVLLSPSSAELSPSELMQPRGQSAPDVYIPTLVNSMRNLSELLLFHCSNEACELRQEDRETLKEVVNNILSSAMNNANGLAPLEKLLTPE RQNQLHALRKVYPDGFSVAVDDNNTLNSGDTFAESSDHHSSALDSPCWKGATVSHWSTFEVVRPSNIRTVEDLSSTNLFGSQISPFKTNATDGTDPQKIE VREADDYTRGPEYGSASFEGLTGTNRFSDEGFGGSVKFQGQNAAVSCSTGVSLFGDIHGSITQDSLNDQSVENSDGEPPKKQITEEGQSTAVKHSGFTDG SLLTKTDDLEYRASHVPYHAVDHVLLSPSSAELSPSELMQPRGQSAPDVYIPTLVNSMRNLSELLLFRCSNEACELRQEDRETLKEVVNNILSSAMNNAN GLAPLEKLLTPERQNQLHALRKGSKMAVPQVSSPVKVQPLKEGHSTLDDIKDGKLPNLSSESAATEIEEHNSTMQALKKILAENLHDEDESQPETLLYKN LWLEAEAQLCSVNHVARYNRMKFEMEKCHSQQPNVVSQNTMSMGMFPRPAVSSGSFCKGTLRFDMKSQQISDGPNSDVSVSSGNSNRDDTVARSQAFTPP SIELVTTNEDDKEAGKANKEIKDSTKADVFMQDTPLSSRSTPMDDVDASVMARFEILRHRADNLSSKVTEEDQPECAGLAYPFVRSLQPTSEDVAEKTIM NGKVETILQNNSVKSMEGQLLVKEHFNLQNGNEAPTRPKSNDATYMESGLVPPLQGPNFCSNNHPPDVSARFAMLKTRAEKQGSPSSRDVEKSSSSKTSP VRNMVDVLDTQKPKSLVHDHLMSGTASHISDAEALYRDQLETLKHMVDTRAPESEAWPPGGPRRNWPFNSDGSLGRMEDDDALISEDKSDVEAFHSCARY DPVILHPMANRRSGDQSHASWYESPSSDWEHVLKEEVAGKPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49490			unknown protein		Lus10032925 [exp]	0	1
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10037528 [exp]	5.5	0.7833
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	6.5	0.7970
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001638 [exp]	9.2	0.8158
AT1G22730			MA3 domain-containing protein ...		Lus10012204 [exp]	9.4	0.7946
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003113 [exp]	13.1	0.7340
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	14.4	0.8032
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10036682 [exp]	17.3	0.7770
					Lus10022149 [exp]	22.2	0.7339
AT4G02715			unknown protein		Lus10042605 [exp]	22.6	0.7640
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032140 [exp]	26.3	0.7801

Compare expression of checked genes

Lus10032925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.