Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05260 267 / 4e-88 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 265 / 2e-87 Peroxidase superfamily protein (.1) AT3G21770 255 / 2e-83 Peroxidase superfamily protein (.1) AT5G06730 253 / 3e-82 Peroxidase superfamily protein (.1) AT5G15180 249 / 3e-81 Peroxidase superfamily protein (.1) AT5G51890 247 / 2e-80 Peroxidase superfamily protein (.1) AT5G64120 245 / 1e-79 Peroxidase superfamily protein (.1) AT3G01190 243 / 1e-78 Peroxidase superfamily protein (.1) AT5G42180 240 / 9e-78 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT2G38380 241 / 1e-77 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015580 [exp] 428 / 2e-152 AT1G05260 221 / 5e-71 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10028736 [exp] 295 / 4e-99 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10028688 [exp] 287 / 7e-96 AT4G11290 265 / 5e-87 Peroxidase superfamily protein (.1) Lus10039680 [exp] 270 / 4e-89 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10038054 [exp] 268 / 2e-88 AT5G51890 264 / 7e-87 Peroxidase superfamily protein (.1) Lus10027164 [exp] 266 / 7e-88 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 266 / 8e-88 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 263 / 1e-86 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10038055 [exp] 263 / 3e-86 AT2G41480 243 / 2e-78 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003600 [exp] 457 / 7e-163 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 420 / 3e-148 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 398 / 1e-139 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 283 / 3e-94 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 279 / 6e-93 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 279 / 6e-93 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 279 / 6e-93 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 279 / 6e-93 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 279 / 8e-93 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 264 / 6e-87 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10032926 pacid=23160325 polypeptide=Lus10032926 locus=Lus10032926.g ID=Lus10032926.BGIv1.0 annot-version=v1.0 ATGATGAAGTTGGTGGAAGGAGTTGTGATAATGATGATGTTCATAACAGTGCATCATGGTGTAGAATGTCAACTTCAAGTTGGATTCTACAGCGGTTCAT GTGGGTTAGCTGAGTTCGTTGTTAAAACTGCTGTAAGAGAAGCTTTCATCAAGGACAGTGGAGTTGCTGCCGGCCTTCTCCGAATGCACTTCCACGACTG CTTCGTCCGAGGGTGTGATGGATCGGTGTTGATAGATTCGACCACATCTAACACGGCCGAGAAAGACAACCCCGCCAACAACCCCAGCCTTCGAGGTTTC CAAGTGATTGATACCGCCAAGTCTAGGCTCGAAAGCATCTGCAAAGGGGTCGTTTCTTGTGCTGACATTCTGGCCTTCGCTGCAAGGGATAGCATCGAGT TGAGTGGAGGTTTTGGCTACGACGTCCCTTCAGGGAGAAAAGACGGCAGAATTTCCTCGTCGTCAGAAGCCTCGTCAAACTTACCTCCTCCATCAGCCAA CGTAGCTCAACTCACTCAAATATTCGCCAACAAGGGACTTTCGCAGGCAGAAATGGTCACTCTCTCCGGAGGACATACTATAGGCCGTTCGCACTGCACA TCTGTGTCGCCTAGGCTCTACAACTTCAACGGAACGGGTCAGGATCCGACTTTGGACTCCAACTATGCCACAGCCTTGAAGCAGCAGTGTCCACAGGGGA ACTCCAATGCTAACCTTGTGGTGCCGATGAATCCTAGGAGCCCCGCCGTATTGGATGAAGGCTACTACGTGGACATCCTCTCCAACCGCGGCCTCTTCAC CTCTGACCAGACCCTGCTCACAAACGCTGTGACCACAGCCCAGGTTAGCCAGAATGCAGCAAGCCGAGCTCTCTGGAGTGCCAAGTTTTCCGCTGCCATG GTGAAGATGGGTCAGATCGGCGTCTCGACTGGCAGTGCTGGTGAGATTCGAGCCAACTGCCGGGTAATCAACAGTTAG
AA sequence Show only first row Show all	>Lus10032926 pacid=23160325 polypeptide=Lus10032926 locus=Lus10032926.g ID=Lus10032926.BGIv1.0 annot-version=v1.0 MMKLVEGVVIMMMFITVHHGVECQLQVGFYSGSCGLAEFVVKTAVREAFIKDSGVAAGLLRMHFHDCFVRGCDGSVLIDSTTSNTAEKDNPANNPSLRGF QVIDTAKSRLESICKGVVSCADILAFAARDSIELSGGFGYDVPSGRKDGRISSSSEASSNLPPPSANVAQLTQIFANKGLSQAEMVTLSGGHTIGRSHCT SVSPRLYNFNGTGQDPTLDSNYATALKQQCPQGNSNANLVVPMNPRSPAVLDEGYYVDILSNRGLFTSDQTLLTNAVTTAQVSQNAASRALWSAKFSAAM VKMGQIGVSTGSAGEIRANCRVINS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	0	1
AT4G38260			Protein of unknown function (D...		Lus10016024 [exp]	1.4	0.9553
AT1G76360			Protein kinase superfamily pro...		Lus10012256 [exp]	2.0	0.9515
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10027969 [exp]	4.2	0.9403
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10027638 [exp]	4.6	0.9419
AT2G26230			uricase / urate oxidase / nodu...		Lus10008952 [exp]	6.0	0.9363
AT1G52540			Protein kinase superfamily pro...		Lus10031673 [exp]	7.1	0.9075
AT5G07360			Amidase family protein (.1.2)		Lus10032519 [exp]	7.9	0.9269
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024246 [exp]	8.0	0.9409
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10010870 [exp]	8.7	0.9405
AT1G10140			Uncharacterised conserved prot...		Lus10007729 [exp]	8.7	0.9250

Compare expression of checked genes

Lus10032926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.