Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49470 173 / 2e-54 NACA2 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) AT4G10480 167 / 4e-52 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1), Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.2) AT1G33040 157 / 4e-48 NACA5 nascent polypeptide-associated complex subunit alpha-like protein 5 (.1) AT3G12390 152 / 3e-46 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) AT5G13850 147 / 2e-44 NACA3 nascent polypeptide-associated complex subunit alpha-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015579 [exp] 218 / 7e-72 AT3G49470 260 / 1e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Lus10041610 [exp] 151 / 6e-46 AT3G12390 229 / 7e-77 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10026133 [exp] 148 / 2e-45 AT3G12390 204 / 2e-68 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10024109 [exp] 147 / 3e-45 AT3G12390 198 / 1e-65 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10008687 [exp] 130 / 1e-35 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003300 [exp] 185 / 9e-59 AT3G49470 172 / 4e-54 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Potri.012G006700 [exp] 184 / 2e-58 AT3G49470 171 / 1e-53 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Potri.001G034400 [exp] 147 / 1e-44 AT3G12390 204 / 5e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.003G190800 [exp] 147 / 3e-44 AT3G12390 204 / 7e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.006G032000 [exp] 145 / 9e-44 AT3G12390 215 / 2e-71 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [flax] [poplar] NAC NAC domain
Representative CDS sequence Show only first row Show all	>Lus10032927 pacid=23160393 polypeptide=Lus10032927 locus=Lus10032927.g ID=Lus10032927.BGIv1.0 annot-version=v1.0 ATGTCTCCCCCAGGCCCCGTCGTTGATCCCGTCGAGCCTGAGACCGAGCAGGTCGTCGTCACCGAGGAGAAGCTCCACCAGAAGCCAATTCAGGGTGATG AACCTGTCGTCGAGGACGTGAAGGAAGAAGACGAGGACGACGATGAAGACGATGATGATGAGGATGATGATGATAAGGACGACGGCACCCTTGGTGCTAA TGGGAGTTCAAAGCAAAGCAGAAGTGAGAAGAAGAGCCGTAAGGCAATGCTGAAGCTAGGCATGAAACCTGTTACTGGTGTTAGCAGGGTCACCATTAAG AGAACCAAGAACATACTATTTTTCATCTCCAAACCAGACGTTTTCAAGAGCCCCAACTCCGACACCTACATCATATTCGGCGAGGCTAAGATCGAGGACT TGAGCTCCCAGCTTCAGACACAGGCTGCCCAGCAGTTCAGAATGCCAGATATGGCATCTGTGCTACCGAAATCTGACCCGGCTGCAGCAGCTGCTGCAGC ACAGGCAGATGAGGAAGAGGAGGAAATTGACGAAACTGGAATCGAGGCTCGTGATATCGATTTGGTTATGACACAGGCAGGAGTTTCGAGGGCTAAGGCT TGCAAGGCTCTCAAGACTCACAGCGGTGACATTGTCAGTGCTATCATGGAGCTCACCACTTGA
AA sequence Show only first row Show all	>Lus10032927 pacid=23160393 polypeptide=Lus10032927 locus=Lus10032927.g ID=Lus10032927.BGIv1.0 annot-version=v1.0 MSPPGPVVDPVEPETEQVVVTEEKLHQKPIQGDEPVVEDVKEEDEDDDEDDDDEDDDDKDDGTLGANGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIK RTKNILFFISKPDVFKSPNSDTYIIFGEAKIEDLSSQLQTQAAQQFRMPDMASVLPKSDPAAAAAAAQADEEEEEIDETGIEARDIDLVMTQAGVSRAKA CKALKTHSGDIVSAIMELTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49470		NACA2	nascent polypeptide-associated...		Lus10032927 [exp]	0	1
AT1G48830			Ribosomal protein S7e family p...		Lus10017497 [exp]	5.0	0.8542
AT5G60670			Ribosomal protein L11 family p...		Lus10023186 [exp]	6.6	0.8518
AT1G09690			Translation protein SH3-like f...		Lus10030882 [exp]	7.7	0.8517
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012883 [exp]	12.5	0.8271
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10013719 [exp]	14.3	0.8420
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	16.2	0.8443
AT3G02080			Ribosomal protein S19e family ...		Lus10013188 [exp]	21.2	0.8331
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10002338 [exp]	21.2	0.8309
AT5G09510			Ribosomal protein S19 family p...		Lus10018777 [exp]	25.0	0.8269
AT5G48760			Ribosomal protein L13 family p...		Lus10043151 [exp]	25.5	0.8376

Compare expression of checked genes

Lus10032927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.