Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24530 505 / 0 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 368 / 3e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 367 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G36690 252 / 1e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 244 / 2e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 230 / 4e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 227 / 8e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 226 / 6e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G16330 216 / 2e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G05600 216 / 2e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015573 [exp] 649 / 0 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 376 / 2e-130 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10024882 [exp] 265 / 7e-87 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000711 [exp] 262 / 9e-86 AT5G24530 263 / 4e-86 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035782 [exp] 258 / 3e-84 AT5G24530 258 / 4e-84 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 232 / 1e-73 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004808 [exp] 226 / 1e-71 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 226 / 4e-71 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 226 / 6e-71 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G006300 [exp] 544 / 0 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 542 / 0 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 397 / 1e-138 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 397 / 2e-138 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 381 / 2e-132 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 363 / 2e-125 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 307 / 2e-103 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150200 [exp] 301 / 8e-101 AT4G10500 323 / 1e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451500 [exp] 292 / 2e-97 AT4G10500 325 / 2e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451300 [exp] 270 / 1e-88 AT4G10500 326 / 1e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10032930 pacid=23160434 polypeptide=Lus10032930 locus=Lus10032930.g ID=Lus10032930.BGIv1.0 annot-version=v1.0 ATGGATACTAAAGTCTTGTCCACAGGAGTCCCTTTCACCAACCTGCCGGCAAGTTACGTCAGGCCGGAATCCGATCGCCCCCGCCTCTCCGAAGTCCTCC ACTCCATTGACATTCCGGTCATCGACCTTTCCTCCCCGGACAGGTCACTAATTGTCCGCCAAATCGAAGCTGCATGCACCAAGTACGGTATCTTCCAGGT GATTAACCACGGAGTGGAGTTGGGTGCGAAGGAGGAGATGTTAGGAGTGGCGAAGGAGTTCTTCGAGCTGCCGGTGGAGGAGAAGATGAAGATTTACTCC GATGACCCCTCTAAGACGATGAGGTTGTCGACGAGCTTCAACGTGAAGAAGGAGAAAGTGCATAATTGGAGAGATTACTTGAGGCTTCACTGTCATCCTC TCAGCAAATACGCCCCTGAGTGGCCTTCCAATCCGCCATCTTTCCGGGACACAGTAGGCAAGTACTGCAAACAAGTAAGAGAACTAGGGTTTCGTTTGGA AGAGCTGATATCGGAGAGTTTAGGACTGGATAAGGAGTACATAGGCAAAGTGATGGGTGAACAAGGTCAACACATGGCAGTCAACTTCTACCCGCCGTGT CCCGAACCAGAGCTTACCTACGGATTGCCGAGCCACACCGACCCTAACGCTCTCACCATTCTCCTTCAAGACCAGCTCGTCCCAGGCCTCCAAGTCCTCA AGGATGGAACGTGGATCGCCGTCAATCCTCACCCCGACGCCTTCGTCATCAACATCGGAGACCAACTTCAGGCTTTGAGCAATGGGAAGTACAAGAGCGT GTGGCACAGGGCGATAACGAATTCGGAGAGAGCGAGGATGTCGGTGGCTTCGTTCCTGTGTCCGCAAGACGATGTAGTGATTAGCCCTGCTGGTGGTGGA TCCTTAGGAGGAGCCGTTTACAGGGACTTCACATATGGGGAGTACTACAGTAAGTTTTGGAGCAGGAATTTGGATCAGGAACATTGCTTGGAACTCTTCA AGATCCGTTTGGCTAGACCTCTAAACTAG
AA sequence Show only first row Show all	>Lus10032930 pacid=23160434 polypeptide=Lus10032930 locus=Lus10032930.g ID=Lus10032930.BGIv1.0 annot-version=v1.0 MDTKVLSTGVPFTNLPASYVRPESDRPRLSEVLHSIDIPVIDLSSPDRSLIVRQIEAACTKYGIFQVINHGVELGAKEEMLGVAKEFFELPVEEKMKIYS DDPSKTMRLSTSFNVKKEKVHNWRDYLRLHCHPLSKYAPEWPSNPPSFRDTVGKYCKQVRELGFRLEELISESLGLDKEYIGKVMGEQGQHMAVNFYPPC PEPELTYGLPSHTDPNALTILLQDQLVPGLQVLKDGTWIAVNPHPDAFVINIGDQLQALSNGKYKSVWHRAITNSERARMSVASFLCPQDDVVISPAGGG SLGGAVYRDFTYGEYYSKFWSRNLDQEHCLELFKIRLARPLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10032930 [exp]	0	1
					Lus10041664 [exp]	4.8	0.8576
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10018221 [exp]	5.0	0.7787
AT1G08140		ATCHX6a	cation/H+ exchanger 6A, cation...		Lus10009077 [exp]	6.0	0.7913
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Lus10014401 [exp]	7.3	0.8338
AT1G49000			unknown protein		Lus10042953 [exp]	7.7	0.8292
AT4G35150			O-methyltransferase family pro...		Lus10006691 [exp]	10.8	0.8291
AT3G11010		AtRLP34	receptor like protein 34 (.1)		Lus10011039 [exp]	13.4	0.8252
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10025200 [exp]	14.0	0.8288
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006172 [exp]	18.3	0.7731
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018379 [exp]	18.3	0.8203

Compare expression of checked genes

Lus10032930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.