Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53730 193 / 4e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 130 / 2e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11660 122 / 2e-34 NHL1 NDR1/HIN1-like 1 (.1) AT2G35960 114 / 3e-31 NHL12 NDR1/HIN1-like 12 (.1) AT3G52470 114 / 4e-31 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06330 112 / 1e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 108 / 5e-29 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G09590 103 / 2e-27 NHL22 NDR1/HIN1-like 22 (.1) AT2G35970 102 / 7e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 90 / 9e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043410 [exp] 127 / 6e-36 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 120 / 1e-33 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10021286 [exp] 119 / 3e-33 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034175 [exp] 119 / 3e-33 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10004202 [exp] 119 / 4e-33 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1) Lus10029406 [exp] 115 / 1e-31 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1) Lus10013327 [exp] 88 / 5e-21 AT3G11660 147 / 2e-44 NDR1/HIN1-like 1 (.1) Lus10000157 [exp] 85 / 4e-20 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10030193 [exp] 78 / 5e-17 AT4G01410 185 / 3e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G006000 [exp] 225 / 1e-74 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 216 / 5e-71 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019600 [exp] 130 / 1e-37 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071500 [exp] 116 / 4e-32 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.006G204200 [exp] 110 / 8e-30 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.005G088000 [exp] 97 / 1e-24 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 96 / 3e-24 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 84 / 8e-20 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G023300 [exp] 72 / 5e-15 AT4G05220 276 / 7e-95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G027400 [exp] 67 / 1e-13 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10032932 pacid=23160403 polypeptide=Lus10032932 locus=Lus10032932.g ID=Lus10032932.BGIv1.0 annot-version=v1.0 ATGTCTCAAATCTTCACACCATCACCAAAACACTGCGCAATATCAAACAAAAGAAGAGAATTCTTCACTAACCACATCTCCACCAAATACTTCCCCTTCA CCAAGAAGCTCTTCTACTTCATCTCAACACTCTTCACCTCAATCCTCTGCTTCATCTTCATCCTCTGGTTCACCCTCCGCCCTTCAAAGCCCCACTTCTC CCTCCAACAAGCCGACATCTACCAGCTCACCCTCCTCTCCTCCTCCGGCCCCAACTTGCTCAACTCATCCATTCAGCTCACCCTCATCTCCGTCAATCCA AACCAGCGAGTCGGCATCTACTACGACGAGTTCTTACTCTATGCTTCCTACAAGGGCCAGCAGATCACTGTTGGCTCTTCAATCCCTGCTTTCTACCAGG GATGTCAGGACACCAGTGTCATGACAGCTTCTCTGATAGGGAGGGAGCTGCCTGTGGCCCCCTCATTTCGGTATGAGGTTGGGCGGGATCGTCAGATTGA TGGGAAGATGGTTTTGAGCTTGAAGGGGAAAGGGAGGTTGAGGTGGAAAGTTGGGAGTTGGGTCTCTGGTAGGTATAGGTTTAATGTCAACTGTGTTGCT GTTATGCCGTTTGGTCCATCTAGTTATTCGGGTCCTCTCACCGCCAAGGGGACTCAGTGTTCTTTTGATGTTTGA
AA sequence Show only first row Show all	>Lus10032932 pacid=23160403 polypeptide=Lus10032932 locus=Lus10032932.g ID=Lus10032932.BGIv1.0 annot-version=v1.0 MSQIFTPSPKHCAISNKRREFFTNHISTKYFPFTKKLFYFISTLFTSILCFIFILWFTLRPSKPHFSLQQADIYQLTLLSSSGPNLLNSSIQLTLISVNP NQRVGIYYDEFLLYASYKGQQITVGSSIPAFYQGCQDTSVMTASLIGRELPVAPSFRYEVGRDRQIDGKMVLSLKGKGRLRWKVGSWVSGRYRFNVNCVA VMPFGPSSYSGPLTAKGTQCSFDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53730			Late embryogenesis abundant (L...		Lus10032932 [exp]	0	1
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10025511 [exp]	1.0	0.9285
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10034962 [exp]	2.4	0.9221
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	3.2	0.9225
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	3.5	0.9040
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	5.3	0.8884
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	5.7	0.9101
AT3G60690			SAUR-like auxin-responsive pro...		Lus10015879 [exp]	5.9	0.9054
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	6.5	0.9037
AT5G16550			unknown protein		Lus10002085 [exp]	6.9	0.8944
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	8.0	0.9026

Compare expression of checked genes

Lus10032932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.