Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13790 226 / 1e-66 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT3G48670 206 / 6e-60 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT4G01180 191 / 7e-55 XH/XS domain-containing protein (.1) AT3G12550 191 / 2e-54 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT5G59390 184 / 4e-52 XH/XS domain-containing protein (.1) AT1G15910 161 / 1e-43 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 160 / 6e-43 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G80790 142 / 1e-36 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT4G01780 55 / 8e-08 XH/XS domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002702 [exp] 250 / 3e-76 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 248 / 2e-75 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10009217 [exp] 201 / 8e-58 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10037986 [exp] 199 / 5e-57 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10002703 [exp] 179 / 2e-49 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10026076 [exp] 170 / 2e-46 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10000949 [exp] 169 / 3e-46 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10005463 [exp] 157 / 3e-45 AT4G00380 117 / 3e-30 factor of DNA methylation 2, XH/XS domain-containing protein (.1) Lus10037987 [exp] 87 / 5e-18 AT5G54570 662 / 0.0 beta glucosidase 41 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G184800 [exp] 315 / 5e-101 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.010G202700 [exp] 273 / 6e-84 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.001G240666 [exp] 244 / 5e-76 AT1G13790 228 / 3e-67 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.003G181000 [exp] 167 / 1e-45 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10032933 pacid=23160346 polypeptide=Lus10032933 locus=Lus10032933.g ID=Lus10032933.BGIv1.0 annot-version=v1.0 ATGAGTCATAGTTCAGAAGATGTAGCTGCCAATCTACATGATGATGGAGGCAAAATCGTTTTTCCTTGGATGGGCGTAGTTGCAAACGTTAAAACTGAAG TGAGAAAGGAACGGAGAGTGGGCGAAAGTGGCTCGAAACTTAGGGACGAGCTGATAACGAAAGGGTATAATCCAGTGAAGGTGCATCCTATATGGAGCGT TTATGGTCATACGGGGATTGCCCTGGTTGAGTTTAACAAAGATTGGGAAGGATACAGGAACGCCCTCAGGTTCGAGAAGGATTTCGAGCTCATGCAATGT GGGAAGGCTGATTATTTTAATTCTGAAGTGTGGAATAGAGGAGATAAGCTCTTCGGCTGGCTTGCAAGAGATGATGAATATCATTCCACTGATCCTTTTG GTAAATTACTCAGAAAGAAAACCGACTTGAAGAGTCTCTCCGACATCGAAGCAGAAGGTGCAAGGAAGGACTCAAAGCTTGTGTCTTTCCTAAAATATGA GCTGAGCGTGAAGAATGAGCACCTTATGGAAATGGAGCATAAGTATCACGAGGTTGCAGTGTCGATGAATGAGCTGATTATTCAGAAAGATGCTATGCTT GTGTCGTACAATGAAGAGATAAGAAAGATGCAGCAGAGTGTTTGTGATGATTTCAAGAAGATTCTGGTTGAACGAGAGAGAGCAAAGCGTGATGTGGAAG CTCAAAGATTGGAACTTGAACAGCAGGAGAAGCAGTTGCAGGAGCGGGAGAAACATAATGAATATGAATTAAGTAAACTGAAGCTCAAGAAAGAGATGAA TGAGAAAGCAATCTTGGAGCAGAAGAAAACAGAGGCTGAAGTGCTCAGTTTAGCAAAGGAGCACCAGCAAGAGAAGGAGAAGATGCACAAGAAAATCCTG GAGCTGGAAACCCAACTGGACGCCAAGCAGGCTGCGGAACTCGAGATAGAGCAGCTACGAGGGGCATTGCAGGTTTTTGGACTGATGAACGAAGATGATG ATGACCCAGAAACCAGGAAACAGAAGGAAGAAATGAAGGAGAAGCTGAAGGATCAGGAGGAAAACTTGGAAAGCTTGGAGGCACTGAATCAAACTCTGAT CATCAAGCAAATTAAGGTGGAGCAAGAACTCAAGGAAGGTCACAAGAAGTTGATAAAGGGATTGTTGGATAATAGACAAAGTGGAAGAGCGAACATTGGT GCAAAGAGGATTAAACTGAACGAAGAAGAAGGAGCAGAGCTGTGGCATTTCAAGGAGAAGAGAGGGGCTACGTTGCTAGAAGGGATTGATTTCATTTGTA AGACATGGAAGCGTTTAAAATAG
AA sequence Show only first row Show all	>Lus10032933 pacid=23160346 polypeptide=Lus10032933 locus=Lus10032933.g ID=Lus10032933.BGIv1.0 annot-version=v1.0 MSHSSEDVAANLHDDGGKIVFPWMGVVANVKTEVRKERRVGESGSKLRDELITKGYNPVKVHPIWSVYGHTGIALVEFNKDWEGYRNALRFEKDFELMQC GKADYFNSEVWNRGDKLFGWLARDDEYHSTDPFGKLLRKKTDLKSLSDIEAEGARKDSKLVSFLKYELSVKNEHLMEMEHKYHEVAVSMNELIIQKDAML VSYNEEIRKMQQSVCDDFKKILVERERAKRDVEAQRLELEQQEKQLQEREKHNEYELSKLKLKKEMNEKAILEQKKTEAEVLSLAKEHQQEKEKMHKKIL ELETQLDAKQAAELEIEQLRGALQVFGLMNEDDDDPETRKQKEEMKEKLKDQEENLESLEALNQTLIIKQIKVEQELKEGHKKLIKGLLDNRQSGRANIG AKRIKLNEEEGAELWHFKEKRGATLLEGIDFICKTWKRLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13790		FDM4	factor of DNA methylation 4, X...		Lus10032933 [exp]	0	1
AT3G08880			unknown protein		Lus10012504 [exp]	1.7	0.8432
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10037668 [exp]	2.6	0.8729
AT3G58480			calmodulin-binding family prot...		Lus10016219 [exp]	6.7	0.8049
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018413 [exp]	9.7	0.7957
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10042390 [exp]	10.9	0.7968
AT2G41945			unknown protein		Lus10017230 [exp]	11.0	0.7348
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10025117 [exp]	15.1	0.7595
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	15.3	0.8264
AT5G03670			unknown protein		Lus10027723 [exp]	18.4	0.7956
AT1G04150			C2 calcium/lipid-binding plant...		Lus10000164 [exp]	19.3	0.8572

Compare expression of checked genes

Lus10032933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.