Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24470 356 / 3e-114 APRR5 pseudo-response regulator 5 (.1) AT2G46790 229 / 3e-68 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G60100 190 / 3e-53 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G02810 179 / 5e-48 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G61380 126 / 3e-30 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT2G25180 100 / 5e-22 GARP ARR12 response regulator 12 (.1) AT3G16857 98 / 5e-21 GARP ARR1 response regulator 1 (.1.2) AT4G31920 96 / 1e-20 GARP ARR10 response regulator 10 (.1) AT2G01760 93 / 4e-20 GARP ARR14 response regulator 14 (.1) AT2G46670 88 / 8e-20 CCT motif family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015571 [exp] 1205 / 0 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10008879 [exp] 545 / 0 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1) Lus10023229 [exp] 486 / 4e-167 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1) Lus10008878 [exp] 459 / 4e-154 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1) Lus10023230 [exp] 454 / 5e-152 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10014018 [exp] 175 / 4e-46 AT5G02810 452 / 6e-148 pseudo-response regulator 7 (.1) Lus10000566 [exp] 131 / 4e-32 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10021629 [exp] 130 / 1e-31 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015720 [exp] 126 / 2e-30 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005900 [exp] 492 / 1e-166 AT5G24470 305 / 9e-94 pseudo-response regulator 5 (.1) Potri.015G002300 [exp] 475 / 3e-160 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.014G106000 [exp] 330 / 6e-104 AT5G24470 271 / 3e-81 pseudo-response regulator 5 (.1) Potri.002G179800 [exp] 249 / 3e-73 AT5G24470 269 / 2e-80 pseudo-response regulator 5 (.1) Potri.010G215200 [exp] 192 / 2e-52 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1) Potri.008G046200 [exp] 189 / 2e-51 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.015G061900 [exp] 127 / 1e-30 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.006G188000 [exp] 105 / 1e-23 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.018G111300 [exp] 104 / 4e-23 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.008G181000 [exp] 99 / 2e-21 AT1G67710 383 / 5e-127 response regulator 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10032934 pacid=23160441 polypeptide=Lus10032934 locus=Lus10032934.g ID=Lus10032934.BGIv1.0 annot-version=v1.0 ATGACTCAGTCCCGGAGCTGGAAAGAGAACGACGCCGGATCAGGAGAATCGATGACTAGTACTAGCTGGAGAAGCGGCGGTGGTGATGAAGAGGAAGAGT TGAAGCAGAGGACCAAAAAGGTTAGGAGAGGTGGTGAAGTAGAGAGTGAGGGTGATTGTGCTCGGAGCAATGGTTTGGAGGTGAGATGGGAGAGATTCTT GCCGAGGATGGTGCTGAGGGTGCTCCTGGTTGAGGCCGATGATTGTACCAGGCAAATCATCGCTGCTCTTCTCCGAAAATGTAGTTACCAAGTCACTGCA GTTCCGGATGGTTTGAAAGCGTGGGAGATACTGACTGGAAGGCCCCATGACATAGATCTCATTTTGACAGAAGTTGAGCTGCCTTCTGTGTCAGGATATG CTCTTCTAACTCTAGTCATGGATCATGACATATGCAAAAACATTCCTGTCATAATGATGTCCACACAGGACTCGGTTCACACAGTTTACAAATGCATGTT GAGAGGTGCAGCGGACTACCTTGTTAAGCCTATAAGGAGAAATGAACTCAGAAATTTGTGGCAGCATGTATGGAGGAGGCATACGCCTATTGTTGCTTTT CAGTCGATGGCAAGGAGAGCCTGCCCAGAGGATAAATATATTGTTTTAGATGAGATAGACCCTGCTTGTGACAATGATGCTGCAAGCAAACCTTCAATTG GCAATCAAGCTTTTCCTCAGAGAAAGGAGTATGTTGAGAAAGGCAGCAATTCACAGGACGGACGTGGTAAATCGCTCTCAAGTGATGCAGAAGTTGACGA ATGCCGGGTCTTGGAGCCCAGTTTGCTGGTTTACGAAAATCATGCCTCGGGGAAGCATTTATCAGCTGCAAGTAAAGAGTCTAGTGCCATGACTCTGGAC AACACTGTTGAAGATGCAGATTTGGATCCCAAGGTTTGTGAAAGTAATAATGCTTGTTTTACTGGTGAAGAAATTGATTTCATGGGAGCAGCTCCGCTTC ACAGATCTACTTCTTTGCATACCAATGTTGAGTCTGACTCTTGTGCGCACTTGGATCTCTCCTTGAGAAGTTCACGTCCTAGTGGGGTTGAGATTCAAGC TGCGGAAGGGACAAGCACACTCAAGCATTCTAGTGCCTCATCCTTCACACGGTACACAGGCAGACAACTATACTTCCAACATTCGACATCATCTAGTGTG TCGAACCCAAAAGAGCCTACAGCAGATTCAGAAAGAAACTTTTCTAGTGTCACTGCTAGTGGTGGTCCATCACCAGGCATTCGTGGGGATATTTCTCTCC CTGTTGTTCAAGTCAAAGAACCCGAAACTGAAAATTCATCTCATCCAAAGTATGCAGTTCAAATCCCAGCTCCAGTTGCTCGAGCGAGGATAAATGCTAA AGCCACCAGCTATACATCCATGTTTCCTCCCTTTCGAGCGAGTGATTCTACTTTCAATGAGACTATGGAAAATCAGGACAAAATGTTAGAATCTTTGGAG GATCAGGGGCGTACTTCTCCCGCGGTTGATCAAAAGAGTGCAAGCAACAGTTTGTGTGATGCCGGTTTAAGCCATCGTAATAGCATGGGGGGCTATGGAA GCACTTGTGGAAGCAATAGTGATGTCGATCAAGTGGTCATGAACAAGGCTGAAGCAGAGAGCAATGATGAAGGAGCTTTCATAAATGTAAAAGGCAGCTC AACTAGATCGATGGAAAGAGAAGCCGCTCTAGCCAAGTTTCGGCTGAAACGAAAAGAAAGATGCTACGACAAAAAGGTTCGATATGAGAGTAGGAAAACA CTTGCCGAGCAGCGTCCCAGAGTAAAAGGTCAGTTTGTTCGTCAAGTACCTGCTGTGGCTTCTACGTTCCGAACCTGA
AA sequence Show only first row Show all	>Lus10032934 pacid=23160441 polypeptide=Lus10032934 locus=Lus10032934.g ID=Lus10032934.BGIv1.0 annot-version=v1.0 MTQSRSWKENDAGSGESMTSTSWRSGGGDEEEELKQRTKKVRRGGEVESEGDCARSNGLEVRWERFLPRMVLRVLLVEADDCTRQIIAALLRKCSYQVTA VPDGLKAWEILTGRPHDIDLILTEVELPSVSGYALLTLVMDHDICKNIPVIMMSTQDSVHTVYKCMLRGAADYLVKPIRRNELRNLWQHVWRRHTPIVAF QSMARRACPEDKYIVLDEIDPACDNDAASKPSIGNQAFPQRKEYVEKGSNSQDGRGKSLSSDAEVDECRVLEPSLLVYENHASGKHLSAASKESSAMTLD NTVEDADLDPKVCESNNACFTGEEIDFMGAAPLHRSTSLHTNVESDSCAHLDLSLRSSRPSGVEIQAAEGTSTLKHSSASSFTRYTGRQLYFQHSTSSSV SNPKEPTADSERNFSSVTASGGPSPGIRGDISLPVVQVKEPETENSSHPKYAVQIPAPVARARINAKATSYTSMFPPFRASDSTFNETMENQDKMLESLE DQGRTSPAVDQKSASNSLCDAGLSHRNSMGGYGSTCGSNSDVDQVVMNKAEAESNDEGAFINVKGSSTRSMEREAALAKFRLKRKERCYDKKVRYESRKT LAEQRPRVKGQFVRQVPAVASTFRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10032934 [exp]	0	1
AT2G46790		TL1, APRR9	TOC1-LIKE PROTEIN 1, Arabidops...		Lus10015571 [exp]	1.4	0.8864
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10037636 [exp]	2.4	0.8089
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10019093 [exp]	4.2	0.8520
AT5G64170			dentin sialophosphoprotein-rel...		Lus10015846 [exp]	5.7	0.8336
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10034461 [exp]	5.7	0.8327
AT3G14470			NB-ARC domain-containing disea...		Lus10005218 [exp]	6.9	0.7682
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10010100 [exp]	8.4	0.8112
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10015619 [exp]	9.0	0.7673
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10012445 [exp]	11.5	0.7343
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10029990 [exp]	18.3	0.7759

Compare expression of checked genes

Lus10032934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.