Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24490 360 / 4e-125 30S ribosomal protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015569 [exp] 559 / 0 AT5G24490 358 / 2e-124 30S ribosomal protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005800 [exp] 358 / 2e-124 AT5G24490 369 / 1e-128 30S ribosomal protein, putative (.1) Potri.015G002200 [exp] 356 / 1e-123 AT5G24490 362 / 3e-126 30S ribosomal protein, putative (.1) Potri.012G026375 [exp] 198 / 2e-62 AT5G24490 204 / 4e-65 30S ribosomal protein, putative (.1) Potri.012G009001 [exp] 134 / 6e-39 AT5G24490 147 / 3e-44 30S ribosomal protein, putative (.1) Potri.011G055100 [exp] 134 / 1e-38 AT5G24490 142 / 2e-42 30S ribosomal protein, putative (.1) Potri.011G054700 [exp] 76 / 2e-17 AT5G24490 89 / 1e-22 30S ribosomal protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02482 [flax] [poplar] Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Representative CDS sequence Show only first row Show all	>Lus10032935 pacid=23160438 polypeptide=Lus10032935 locus=Lus10032935.g ID=Lus10032935.BGIv1.0 annot-version=v1.0 ATGGCCGCCACCGTCTTGCACACTACCTGTCTTCTTCGGCCCCACTCCTCATCGCTTCCTTCACCGGCTTCGTCCTCCGTCTCTTCCGTCGTCTCCGCAA ACCCCAATTTTATTGCTCATGTCAACTTATATTCTCTCCATGGTAGCACTACAAGATTCCTCGAGATCCGCCGGAATAGAAAATGCCATTCCAGCAATCC ATTCTCTGTACGCATGTCTTGGGACGGACCTCTCTCTTCCGTCAAGCTGATCATTCAGGGCAAGAACTTGCAGTTAACCGATGCAATCAAGCAGCATGTG GAAGAAAAGGTTGGCAAGGCGATCCAGAAACACAGTCATCTTGTCCGGGAGGTTGATGTCAGGCTATCTGTTCGAGGTGGCGAGTTTGGTAAAGGTCCAA GAATTCGCAGATGTGAGGTTACTTTGTTTACGAAGAAACATGGGGTCGTTCGAGCTGAAGAGGATGCCGAGACGACATTTGCAAGCATAGATTTGGTGTC ATCAGTTGTCCAGAGAAAGTTGAGGAAAATAAAAGAGAAGGACTCCGATCATGGCCGCCACATGAAGGGTAATAGTAGATTGACGTTCGCAGAAACAATG GTAGAACCTTACTCAGAAGCCGAAGTAGTGGAATTGGACGGGGAAGATGAAAACGTGAACGGAGCTTCCGGACTAGTGGACGGTGAAGATTTCGTAGAAG AGGTTGTGCGGAAGAAGTATTTCGATATGCCACCATTGACAGTCTCGGAAGCGATTGAGCAGCTGGAAATGGTAGACCACGATTTCTACGGGTTCAGGAA TGAAGAAACTGGTGAAGTAAACATCATCTACAAAAGGGAAGCGGGTGGGTATGGTCTTATTATACCTAAAGGGGATGGTAAAACTGAGAAAGTAGAGCCA TTGGAGATTCAAGCTACTGAATCATCGTTTGCAGAGTAG
AA sequence Show only first row Show all	>Lus10032935 pacid=23160438 polypeptide=Lus10032935 locus=Lus10032935.g ID=Lus10032935.BGIv1.0 annot-version=v1.0 MAATVLHTTCLLRPHSSSLPSPASSSVSSVVSANPNFIAHVNLYSLHGSTTRFLEIRRNRKCHSSNPFSVRMSWDGPLSSVKLIIQGKNLQLTDAIKQHV EEKVGKAIQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETTFASIDLVSSVVQRKLRKIKEKDSDHGRHMKGNSRLTFAETM VEPYSEAEVVELDGEDENVNGASGLVDGEDFVEEVVRKKYFDMPPLTVSEAIEQLEMVDHDFYGFRNEETGEVNIIYKREAGGYGLIIPKGDGKTEKVEP LEIQATESSFAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	0	1
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10018085 [exp]	1.4	0.9556
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10012939 [exp]	2.4	0.9371
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	3.7	0.9522
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10040375 [exp]	4.5	0.9277
AT1G79720			Eukaryotic aspartyl protease f...		Lus10024098 [exp]	4.7	0.9068
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10026983 [exp]	4.9	0.9309
AT5G47040		LON2	lon protease 2 (.1)		Lus10001083 [exp]	5.2	0.9175
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10037817 [exp]	5.5	0.8765
AT5G24490			30S ribosomal protein, putativ...		Lus10015569 [exp]	6.5	0.9188
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10042322 [exp]	6.5	0.9024

Compare expression of checked genes

Lus10032935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.