Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015567 [exp] 183 / 1e-58 AT5G24500 94 / 6e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G021300 [exp] 48 / 4e-07 AT5G24500 81 / 6e-17 unknown protein Potri.015G005100 [exp] 47 / 1e-06 AT5G24500 68 / 2e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032937 pacid=23160352 polypeptide=Lus10032937 locus=Lus10032937.g ID=Lus10032937.BGIv1.0 annot-version=v1.0 ATGACGTGCTCAATCTCCGCCGAAAAGTCCAGTTCAAACTGGCTGGACCGCCTCCGCTCCACCAAAGGCTTCCCCACCTCCGGTGACCTCACCCTAGATC ACTTCCTCACCAATCCCACCGCCGAACAGCCTCCCGATTCCCCTAAACCCGATGTTTCCACCTCCAATTCAAACATCAACTCATCCAACTCCGTCGAGAC TTCCGCCCAAATTGAAGGAGAAAGGGACTGGTTCGGCGTCATGAACCATGTCCTCTCCGATCTCTTCGTCATGGGCGGCGGCCCCACCACATCCATCTCC GCGTCAAAGAGCGCCCGTAAACAGACGAACCCTAAGTTTTTCCCGCTTCCTCCTCCGCCGGAAGACGACAACAAGGCTGTTGCCGTCGCCGTCGCTTCTT CTTTCAATTCCGACCATAACTTGAAATTTAGATAA
AA sequence Show only first row Show all	>Lus10032937 pacid=23160352 polypeptide=Lus10032937 locus=Lus10032937.g ID=Lus10032937.BGIv1.0 annot-version=v1.0 MTCSISAEKSSSNWLDRLRSTKGFPTSGDLTLDHFLTNPTAEQPPDSPKPDVSTSNSNINSSNSVETSAQIEGERDWFGVMNHVLSDLFVMGGGPTTSIS ASKSARKQTNPKFFPLPPPPEDDNKAVAVAVASSFNSDHNLKFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24500			unknown protein		Lus10032937 [exp]	0	1
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10034844 [exp]	4.9	0.7726
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10038880 [exp]	8.2	0.7949
AT1G16560			Per1-like family protein (.1.2...		Lus10015006 [exp]	12.1	0.7829
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	17.9	0.7506
AT4G01000			Ubiquitin-like superfamily pro...		Lus10010125 [exp]	20.8	0.7687
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10015002 [exp]	24.5	0.7532
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10038759 [exp]	25.9	0.7516
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	28.7	0.7158
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10043330 [exp]	37.1	0.7374
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008928 [exp]	39.0	0.7323

Compare expression of checked genes

Lus10032937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.