Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64720 417 / 1e-144 CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G54170 377 / 6e-128 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G14500 349 / 6e-117 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT3G23080 326 / 3e-108 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT1G55960 130 / 1e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT3G13062 129 / 8e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033247 [exp] 402 / 6e-138 AT1G64720 523 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10021883 [exp] 325 / 2e-107 AT4G14500 605 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10041166 [exp] 322 / 2e-106 AT4G14500 607 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10008281 [exp] 289 / 3e-96 AT1G64720 374 / 1e-130 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10015566 [exp] 126 / 5e-34 AT1G64720 105 / 5e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10033334 [exp] 122 / 1e-30 AT1G55960 384 / 5e-132 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10034791 [exp] 100 / 2e-22 AT3G13062 346 / 2e-115 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Lus10000083 [exp] 79 / 7e-17 AT3G23080 122 / 6e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G021400 [exp] 469 / 5e-164 AT1G64720 478 / 2e-168 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.015G005000 [exp] 467 / 4e-163 AT1G64720 474 / 1e-166 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.011G151500 [exp] 420 / 6e-145 AT1G64720 515 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.001G450100 [exp] 409 / 2e-140 AT1G64720 489 / 6e-173 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G076500 [exp] 324 / 4e-107 AT4G14500 571 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.008G162600 [exp] 312 / 2e-102 AT4G14500 581 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.007G002700 [exp] 122 / 2e-30 AT3G13062 390 / 5e-134 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Potri.014G001100 [exp] 116 / 1e-28 AT3G13062 416 / 3e-144 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032938 pacid=23160371 polypeptide=Lus10032938 locus=Lus10032938.g ID=Lus10032938.BGIv1.0 annot-version=v1.0 ATGGGTATAATTCTCGACTCCGTTTGTGGGTTTTTGGGATCCTCTCCTGATGTCGCTCTCTGTACTCCGACAATGGTGTTCTTCGCTCTGGTATGCGTGG GTTTCATCTTTGGGTTAACAATTGGTTGGGCATGGAAGCCTAAATGGGCAACCTTTCCTGGACAAACCCAGCAACCACCCTTGCTGTGTTCTTCTCCACA CAAATTGATTGATTCATCGCCGCCGTCTTCCCCTTCCCGTTCAGCTGTTTCTCCGCTCAAGGGTTTTGGTTCCGCTCCTTGCCTCACTTCCTTAATGCTC ACCTCCCCCAATTTGGGGTGTTACTTAAACCCTACTGTCCCCAATTCCCAATTTGACGATTCCTGTGGAACATCATCGCAGCTAAACAATGAAGAAAAGT CTCATGCTGCTGATCTGGTGAGAGAAGAGGATTTGGAGTATCTGCATCAGCTCGTTGAGACAAAAGATGGAGGTCCTGATTGGATAAAGATGATGGATCG TTCCACGCCCGGTATGACTTACCAAGCATGGAGAAGAGACGCCAAGAATGGCCCTCCTCAATACCGTACTAGAACTGTTTTCGAGGATGCCTCACCGGAG ATAGTGAGAGATTTCTTTTGGGACGACGAGTTCCGACCACATTGGGACGATATGCTTGCCTTTGCTGCTACTTTGGATGAGTGTCTCATCACAGGTTCAA TGGTGGTTCATTGGTTACGTAAATTCCCATTCTTCTGTAGCGACAGAGAGTACACGATAGGGCGGCGAATTTGGGAGTCAGGCAGGTCTTATTATTGTGT TACCAAGGGAGTACCGTATCCTTCCGTCCCAAGGCATGACAAACCAAGACGTGTTGATTTGTTCTATTCAAGTTGGTTTATTCGAGCAGTGGAATCCAGA AGAGGGGATGGCCAGCTGACGGCTTGTGAAGTCCTGCTCTTCCACTATGAAGATATGGGGATTCCATGGGAAATCTCAAAGCTCGGTGTTCGGCAGGGAA TGTGGGCATCGGTCAAGAAGATCGAGCTAGGGTTACTTGCTTACCAAACAGCCAGGGCCTCAGGAGCAGCACCCTCTCGGCCTGCCTTTATGGCTGGGAT CAGTACCAAAGTGAATCCGGAAGGATTCCCGGAGAACACCAAAGAATCGTCCGAATCAGAAGCAGGAAGTTCCTCAGTTGAAAGCTCAGGAAGGAACATA TCAAAGGTGTTGATTATAGGTGCAGCTGTTGCCCTTGCATGCAGCATCGACCAGGGACTGTTGGGTAAAGCTTGTATTTTTGGGATATCTAGATGGTTAG GGAATTTGAGGAAGAGATCTGTAAGTTAA
AA sequence Show only first row Show all	>Lus10032938 pacid=23160371 polypeptide=Lus10032938 locus=Lus10032938.g ID=Lus10032938.BGIv1.0 annot-version=v1.0 MGIILDSVCGFLGSSPDVALCTPTMVFFALVCVGFIFGLTIGWAWKPKWATFPGQTQQPPLLCSSPHKLIDSSPPSSPSRSAVSPLKGFGSAPCLTSLML TSPNLGCYLNPTVPNSQFDDSCGTSSQLNNEEKSHAADLVREEDLEYLHQLVETKDGGPDWIKMMDRSTPGMTYQAWRRDAKNGPPQYRTRTVFEDASPE IVRDFFWDDEFRPHWDDMLAFAATLDECLITGSMVVHWLRKFPFFCSDREYTIGRRIWESGRSYYCVTKGVPYPSVPRHDKPRRVDLFYSSWFIRAVESR RGDGQLTACEVLLFHYEDMGIPWEISKLGVRQGMWASVKKIELGLLAYQTARASGAAPSRPAFMAGISTKVNPEGFPENTKESSESEAGSSSVESSGRNI SKVLIIGAAVALACSIDQGLLGKACIFGISRWLGNLRKRSVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	0	1
AT4G16563			Eukaryotic aspartyl protease f...		Lus10008513 [exp]	1.0	0.8528
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	5.1	0.8334
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Lus10033288 [exp]	5.5	0.7975
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10004812 [exp]	6.6	0.7995
AT1G60420			DC1 domain-containing protein ...		Lus10017252 [exp]	8.1	0.8191
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Lus10021965 [exp]	8.8	0.7717
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	9.5	0.7895
AT5G19590			Protein of unknown function, D...		Lus10017733 [exp]	9.5	0.7967
AT3G61320			Bestrophin-like protein (.1)		Lus10037849 [exp]	10.8	0.7787
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	13.9	0.7757

Compare expression of checked genes

Lus10032938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.