Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32790 381 / 4e-132 CID11 CTC-interacting domain 11 (.1.2) AT3G49390 379 / 3e-131 CID10 CTC-interacting domain 10 (.1.2) AT4G10610 375 / 5e-130 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) AT3G14450 333 / 9e-114 CID9 CTC-interacting domain 9 (.1) AT1G53650 325 / 7e-111 CID8 CTC-interacting domain 8 (.1.2) AT5G24440 305 / 1e-102 CID13 CTC-interacting domain 13 (.1) AT4G34110 62 / 2e-10 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G16940 59 / 2e-09 Splicing factor, CC1-like (.1.2.3) AT1G22760 59 / 2e-09 PAB3 poly(A) binding protein 3 (.1) AT5G09880 56 / 3e-08 Splicing factor, CC1-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008851 [exp] 521 / 0 AT3G49390 427 / 7e-150 CTC-interacting domain 10 (.1.2) Lus10032942 [exp] 488 / 4e-174 AT3G49390 421 / 2e-147 CTC-interacting domain 10 (.1.2) Lus10033242 [exp] 361 / 3e-124 AT1G32790 436 / 1e-153 CTC-interacting domain 11 (.1.2) Lus10008275 [exp] 363 / 4e-124 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2) Lus10034466 [exp] 68 / 2e-12 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10002835 [exp] 68 / 4e-12 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 67 / 5e-12 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 64 / 7e-11 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 63 / 1e-10 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G005400 [exp] 432 / 7e-152 AT1G32790 415 / 5e-145 CTC-interacting domain 11 (.1.2) Potri.012G022000 [exp] 402 / 4e-140 AT1G32790 428 / 4e-150 CTC-interacting domain 11 (.1.2) Potri.011G152700 [exp] 358 / 4e-123 AT4G10610 401 / 5e-140 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) Potri.011G095800 [exp] 355 / 9e-123 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1) Potri.001G377500 [exp] 352 / 1e-121 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.001G448800 [exp] 305 / 1e-102 AT1G32790 363 / 2e-125 CTC-interacting domain 11 (.1.2) Potri.004G177000 [exp] 67 / 5e-12 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.001G304000 [exp] 64 / 7e-11 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G137200 [exp] 63 / 9e-11 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.009G099300 [exp] 60 / 8e-10 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07145 [flax] [poplar] PAM2 Ataxin-2 C-terminal region CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10032941 pacid=23160331 polypeptide=Lus10032941 locus=Lus10032941.g ID=Lus10032941.BGIv1.0 annot-version=v1.0 ATGGTGGGACAAAAAACTAGCCAGAATTTGGACAACAACAACACTGTTGTCTCATCGGACCTGAACAACGCAAAGTCCATTGACGAATCTTCAATGATCG ACAGTAGAGACCCGATTTCTCAGCCCAAGGACGATGATGATCAGGGGGTTGATGGTAGGTGTGATCAGCCAGCTGAGCTTAGGGATGGGGCTGATAAGGT GGTCAACAACGATTTGGATGGGTTCGATGACAATCAAAAGCCAGTGATGGCTAAGTCTGATATGAGTGAGTTGGTGGATATGTTGTCCAAGTTGAATCCC ATGGCTCAAGAGTTTGTGCCACCTTCTCTTGCTAAAAATCATTGCTTTGGGGATAACGGGTTTGGGTATGCTAACAATCTTGGAATGCTTAGTCCTAATG GGAATGCCAACGGGAATATCAAAAGGAAGAACAGTTTTAATCAAGGAAGGAAAAGAACCAACAATAGGAGGACAGTTTATGTGTCTGACATTGACCAGCA GGTTACTGAAGAGCAGCTCGCTGGTCTATTTATTCATTGTGGACAAGTTGTTGATTGTCGTATATGCGGTGATCCCAATTCAGTCCTTCGCTTTGCTTTC ATTGAATTTACTGATCAAGAAGGTGCAAGGGTTGCTTTGAACTTGTCTGGGACCGTGCTCAGATATTACCCGCTGAGGGTGTTGCCTTCAAAAACTGCTA TTGCGCCTGTTAACCCAACATTTTTGCCACAGTCTGAAGATGAACGCGAGATGTGTGCTAGGACTATTTACTGCACGAATATAGATAAGAAGATTTCTCA AGCTGATGTTAGACTGTTCTTTGAATCTTTTTGTGGAGAGGTTCAATGCTTGAGACTCCTTGGTGATTATCACCATTCAACTCGTATTGCTTTTGTTGAG TTTGCAATTGCTGAGAGTGCAATTGTTGCCCTTAACTGTAGTGGAGCTGTTCTGGGATCCTTGCCCATAAGGGTAAGCCCGTCGAAGACACCAGTTCGTC CACATTCTCCTCGACTATCGATGCAGTAA
AA sequence Show only first row Show all	>Lus10032941 pacid=23160331 polypeptide=Lus10032941 locus=Lus10032941.g ID=Lus10032941.BGIv1.0 annot-version=v1.0 MVGQKTSQNLDNNNTVVSSDLNNAKSIDESSMIDSRDPISQPKDDDDQGVDGRCDQPAELRDGADKVVNNDLDGFDDNQKPVMAKSDMSELVDMLSKLNP MAQEFVPPSLAKNHCFGDNGFGYANNLGMLSPNGNANGNIKRKNSFNQGRKRTNNRRTVYVSDIDQQVTEEQLAGLFIHCGQVVDCRICGDPNSVLRFAF IEFTDQEGARVALNLSGTVLRYYPLRVLPSKTAIAPVNPTFLPQSEDEREMCARTIYCTNIDKKISQADVRLFFESFCGEVQCLRLLGDYHHSTRIAFVE FAIAESAIVALNCSGAVLGSLPIRVSPSKTPVRPHSPRLSMQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10032941 [exp]	0	1
					Lus10012416 [exp]	4.2	0.8739
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035644 [exp]	6.3	0.7621
AT5G53110			RING/U-box superfamily protein...		Lus10003401 [exp]	8.3	0.6626
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10039138 [exp]	9.8	0.7146
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10033437 [exp]	10.0	0.6931
					Lus10030838 [exp]	11.5	0.6645
					Lus10000351 [exp]	11.8	0.6964
					Lus10002886 [exp]	13.2	0.6964
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	14.5	0.6964
AT4G27300			S-locus lectin protein kinase ...		Lus10037865 [exp]	15.5	0.6571

Compare expression of checked genes

Lus10032941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.