Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32790 383 / 2e-132 CID11 CTC-interacting domain 11 (.1.2) AT3G49390 380 / 3e-131 CID10 CTC-interacting domain 10 (.1.2) AT4G10610 370 / 9e-128 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) AT3G14450 328 / 3e-111 CID9 CTC-interacting domain 9 (.1) AT1G53650 326 / 9e-111 CID8 CTC-interacting domain 8 (.1.2) AT5G24440 298 / 8e-100 CID13 CTC-interacting domain 13 (.1) AT1G22760 61 / 6e-10 PAB3 poly(A) binding protein 3 (.1) AT4G34110 61 / 6e-10 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G16940 59 / 3e-09 Splicing factor, CC1-like (.1.2.3) AT1G49760 54 / 1e-07 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008851 [exp] 680 / 0 AT3G49390 427 / 7e-150 CTC-interacting domain 10 (.1.2) Lus10032941 [exp] 468 / 6e-166 AT1G32790 383 / 4e-133 CTC-interacting domain 11 (.1.2) Lus10033242 [exp] 365 / 3e-125 AT1G32790 436 / 1e-153 CTC-interacting domain 11 (.1.2) Lus10008275 [exp] 367 / 4e-125 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2) Lus10002835 [exp] 64 / 7e-11 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 64 / 8e-11 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 63 / 2e-10 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10034466 [exp] 62 / 4e-10 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10010370 [exp] 62 / 4e-10 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G005400 [exp] 463 / 2e-163 AT1G32790 415 / 5e-145 CTC-interacting domain 11 (.1.2) Potri.012G022000 [exp] 443 / 7e-156 AT1G32790 428 / 4e-150 CTC-interacting domain 11 (.1.2) Potri.001G377500 [exp] 347 / 5e-119 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.011G095800 [exp] 345 / 3e-118 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1) Potri.011G152700 [exp] 347 / 4e-118 AT4G10610 401 / 5e-140 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) Potri.001G448800 [exp] 323 / 2e-109 AT1G32790 363 / 2e-125 CTC-interacting domain 11 (.1.2) Potri.004G177000 [exp] 63 / 1e-10 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.001G304000 [exp] 62 / 3e-10 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.010G209701 [exp] 61 / 6e-10 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.002G124200 [exp] 60 / 1e-09 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07145 [flax] [poplar] PAM2 Ataxin-2 C-terminal region CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10032942 pacid=23160440 polypeptide=Lus10032942 locus=Lus10032942.g ID=Lus10032942.BGIv1.0 annot-version=v1.0 ATGGCTATTGTTGCTGAAAATGGTGGGCCGAAAAATGGGGTCACCGGTCAGAATTTCGACACCACCACTGTCTTGTCATCTGACTCCAACGGCGTTGAGA ACACAAAACCCACCGACGACGAATCCACCGCGATCGAAGGCGGAAACACAATTTCTCAGCCGCAGAACGATGATCGGTCGGTGGATGATGGTAAGTGCGA CCAGCTGTCGGAGCTGGAGAATGGAACTTCTGATTTGAGTACGGTGAAGAACGATGGGACCAAGTCTGATGATGGGTTTGGGGGTGCCAATCATCAGATG AATTTCTCTAAAGTTAATGGGGCGAATGATATGAGTGAGTTAGTGGATATGCTGTCCAAGTTGAATCCGATGGCTCAAGAGTTTGTACCACCTTCTCTTG CTAAAAATCATGGCTTTTGGGATAACGGATTTGGGTACGCTAACAATTTTGGAATGCCTAATCCCAACGGGAATGCAAATGGAAATATAAAAAGGAAGAA CAATTTTAACCAAGGAAGGAGAAGAACCAACAGTAGGAGTATGGCTCAGCGCGAGGACGTAATTAGGAGGACAGTATATGTGTCCGACATTGATCAGCAG GTTACGGAGGAGCAGCTCGCCGGTCTTTTTATTCATTGTGGACAAGTTGTTGATTGTCGTATATGCGGTGATCCTAATTCAGTCCTTCGATTCGCTTTCA TTGAATTTACTGATGAAGACGGTGCAAGGGTTGCTTTAAATTTGTCTGGGACTGTGCTTGGATATTACCCACTAAGAGTGCTGCCTTCCAAAACTGCCAT TGCACCTGTTAACCCTACATTTTTGCCAAGGTCTGAAGATGAGCGTGAAATGTGTGCTAGGACTATATACTGCACAAATATAGACAAGAAGATTTCTCAA GCAGATGTTAGACTGTTCTTTGAATCGTTTTGTGGAGAGGTTCAATGCTTAAGGCTCCTTGGTGATTATCATCATTCAACTCGTATTGCTTTCGTTGAGT TTGCAATGGCTGAGAGTGCAATTGCTGCTCTCAACTGTAGCGGAGCTGTTCTGGGATCCTTGCCCATAAGGGTAAGCCCGTCGAAGACACCAGTTCGCCC ACGTGTTCCTCGACCATCTTCGATGCGCTAA
AA sequence Show only first row Show all	>Lus10032942 pacid=23160440 polypeptide=Lus10032942 locus=Lus10032942.g ID=Lus10032942.BGIv1.0 annot-version=v1.0 MAIVAENGGPKNGVTGQNFDTTTVLSSDSNGVENTKPTDDESTAIEGGNTISQPQNDDRSVDDGKCDQLSELENGTSDLSTVKNDGTKSDDGFGGANHQM NFSKVNGANDMSELVDMLSKLNPMAQEFVPPSLAKNHGFWDNGFGYANNFGMPNPNGNANGNIKRKNNFNQGRRRTNSRSMAQREDVIRRTVYVSDIDQQ VTEEQLAGLFIHCGQVVDCRICGDPNSVLRFAFIEFTDEDGARVALNLSGTVLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKISQ ADVRLFFESFCGEVQCLRLLGDYHHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPVRPRVPRPSSMR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10032942 [exp]	0	1
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	1.4	0.9244
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	4.0	0.8795
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10043112 [exp]	9.8	0.8769
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10019104 [exp]	10.0	0.8260
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	11.7	0.8556
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	12.4	0.8505
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	12.5	0.8721
AT1G71980			Protease-associated (PA) RING/...		Lus10006074 [exp]	13.0	0.8273
AT1G24350			Acid phosphatase/vanadium-depe...		Lus10036984 [exp]	13.2	0.8208
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10032574 [exp]	14.3	0.8675

Compare expression of checked genes

Lus10032942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.