Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20820 463 / 9e-159 FAD-binding Berberine family protein (.1) AT5G44440 458 / 9e-157 FAD-binding Berberine family protein (.1) AT1G30700 447 / 1e-152 FAD-binding Berberine family protein (.1) AT4G20840 435 / 7e-148 FAD-binding Berberine family protein (.1) AT5G44410 433 / 5e-147 FAD-binding Berberine family protein (.1) AT5G44360 426 / 3e-144 FAD-binding Berberine family protein (.1) AT1G26420 425 / 4e-144 FAD-binding Berberine family protein (.1) AT1G30710 423 / 4e-143 FAD-binding Berberine family protein (.1) AT4G20860 420 / 6e-142 FAD-binding Berberine family protein (.1) AT1G30760 419 / 9e-142 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038436 [exp] 538 / 0 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 504 / 9e-175 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 504 / 1e-174 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 499 / 8e-173 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 498 / 2e-172 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 484 / 5e-168 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 455 / 1e-155 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 451 / 7e-154 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 446 / 2e-152 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461800 [exp] 595 / 0 AT5G44440 516 / 1e-179 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 592 / 0 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 591 / 0 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462000 [exp] 590 / 0 AT5G44440 520 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 590 / 0 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 588 / 0 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461500 [exp] 587 / 0 AT4G20820 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162828 [exp] 585 / 0 AT5G44440 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162800 [exp] 583 / 0 AT5G44440 540 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162856 [exp] 583 / 0 AT5G44440 545 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10032943 pacid=23160354 polypeptide=Lus10032943 locus=Lus10032943.g ID=Lus10032943.BGIv1.0 annot-version=v1.0 ATGGCGGTAGCTTCTCCACTCCTGCTGCTTCTTCTGCTTCTTCCTTTATCATGTCTAACTTTGGCTGCTCCAGATCAACCTCGTAACCATTTTCTCGGAT GCCTTGATTCTGAAACCTCTCCTTCTTCAGCAGCATTGATTTCCCGCCTAGTTTACACCCGAACCAACCCTTCCTATTCATCTGTTCTGCAATTCTCCAT CCGAAATCCTCGATTCAACACGAATACCACCGCCAAGCCAGTACTCGTTATAACACCAAAATCCATATCTCACATCCAATCTACCATCAAATGCTCCCGA AAACACAGGCTTCAACTCAGAGTTCGAAGCGGCGGTCATGACTACGAGGGTCTTTCCTACGCTTCTGTCAACCTCAATGCACAATTCATAGTCATGGACA TGATCAACCTTCGAGAAATCACGGTAGATGTCACCAGCAAGACCGTGTGGGTCCAAGCTGGCGCCACATTAGGCGAGCTTTACTACGCCATCTCACAGAA GAGCAGAACTCTAGCTTTTCCAGGTGGGATATGCCCAACTGTCGGAATTGGTGGGTACGTCAGCGGCGGAGGATACGGCAACCTCTTGAGGAAATACGGC CTCGCGGCCGATAATGTAGTGGACGCGGTAATCGTTGACGCAAAAGGTCGAACACTGGATAGGCATTCCATGGGAGAAGATATGTTCTGGGCTGTTCGAG GAGGTGGAGGAAATAGCTTCGGCGTCGCGGTGGCCTGGAAAGTAAATCTAGTCGCCGTTCCTGAAAAATTGACGGTATTCAGAGTCAGTAGAACTCTAGA ACAGAACGCTACAAAGCTCGTCCATCAATGGCAGACCGTAGCGAACGAGCTTCCAGAGGATATAATAATCATGGCAACCATACAGAAAGTAAACTCAACG ATCCAGGCCACATTCAACTCGCTGTACCTCGGTGGAATCGACGGCGTTCTTCAATTGATTCAAGAGAGATTTCCAGACCTAGGGTTGGTGAAATCGGACT GTACAGAGATGAGCTGGATAGAATCAACCGTACATTTCGCCAGGTTTCCGAGGAACACTCCTCCGGAGATTCTGCTAAACAGGACGATTACTCTCCTGAC GGGAACGGCCAAGTACAAAGGGAAATCCGATTACGTCCAAGAACCTATACCTGAAATCGGATGGGAAGGTGTGTGGAAGAAACTGGACGAATTGGGGCCG ATGGCGGGTGCTTTGGTGATGATTCCTTACGGAGGAAAGATGGAGGAGATTCCGGAATGGAGCTTGCCGTTCCCGCACAGAGCAGGGAACCTGTTCATGA TCCAGTACGACGTGTTCTGGAACGAAGATGGGATTGAAGCATCGGAGAGGAACGTGAATTGGATAAGAGAAGTTTACAGTTACATGACTCCGTTTGTTTC GGAGAACCCTAGAGCTGCGTATATGAATTATAGGGATTTGGACATTGGAATGAACGGCATTAATGGAGGGAAAGGTAGAGGAGAAGAAGAAGAAGAAGAA GCGAGGGTTTGGGGATTGAAGTATTTCAAGAGCAATTGGGATAAATTGGTGAAAGTGAAGACGGCTGTTGATCCTGATAATTTTTTCAGGAATGAGCAGA GCATTCCTCCATTGGCGTTATAG
AA sequence Show only first row Show all	>Lus10032943 pacid=23160354 polypeptide=Lus10032943 locus=Lus10032943.g ID=Lus10032943.BGIv1.0 annot-version=v1.0 MAVASPLLLLLLLLPLSCLTLAAPDQPRNHFLGCLDSETSPSSAALISRLVYTRTNPSYSSVLQFSIRNPRFNTNTTAKPVLVITPKSISHIQSTIKCSR KHRLQLRVRSGGHDYEGLSYASVNLNAQFIVMDMINLREITVDVTSKTVWVQAGATLGELYYAISQKSRTLAFPGGICPTVGIGGYVSGGGYGNLLRKYG LAADNVVDAVIVDAKGRTLDRHSMGEDMFWAVRGGGGNSFGVAVAWKVNLVAVPEKLTVFRVSRTLEQNATKLVHQWQTVANELPEDIIIMATIQKVNST IQATFNSLYLGGIDGVLQLIQERFPDLGLVKSDCTEMSWIESTVHFARFPRNTPPEILLNRTITLLTGTAKYKGKSDYVQEPIPEIGWEGVWKKLDELGP MAGALVMIPYGGKMEEIPEWSLPFPHRAGNLFMIQYDVFWNEDGIEASERNVNWIREVYSYMTPFVSENPRAAYMNYRDLDIGMNGINGGKGRGEEEEEE ARVWGLKYFKSNWDKLVKVKTAVDPDNFFRNEQSIPPLAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20820			FAD-binding Berberine family p...		Lus10032943 [exp]	0	1
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10026666 [exp]	6.0	0.9094
AT1G17860			Kunitz family trypsin and prot...		Lus10013770 [exp]	10.8	0.9278
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10026094 [exp]	14.6	0.9167
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022357 [exp]	16.6	0.9110
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10002324 [exp]	22.1	0.9086
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034260 [exp]	23.7	0.8686
AT4G27270			Quinone reductase family prote...		Lus10006748 [exp]	24.0	0.8773
AT1G17860			Kunitz family trypsin and prot...		Lus10039209 [exp]	32.1	0.9078
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10025756 [exp]	33.8	0.8944
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10029826 [exp]	36.6	0.8704

Compare expression of checked genes

Lus10032943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.