Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) AT5G24080 263 / 8e-79 Protein kinase superfamily protein (.1) AT4G21390 266 / 1e-76 B120 S-locus lectin protein kinase family protein (.1) AT2G19130 265 / 4e-76 S-locus lectin protein kinase family protein (.1) AT5G35370 257 / 3e-73 S-locus lectin protein kinase family protein (.1) AT1G11410 254 / 3e-72 S-locus lectin protein kinase family protein (.1) AT5G60900 252 / 3e-72 RLK1 receptor-like protein kinase 1 (.1) AT4G32300 251 / 2e-71 SD2-5 S-domain-2 5 (.1) AT1G61500 251 / 3e-71 S-locus lectin protein kinase family protein (.1) AT1G11300 255 / 9e-71 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024348 [exp] 1355 / 0 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 1318 / 0 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10004283 [exp] 576 / 0 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10013252 [exp] 357 / 1e-110 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10006052 [exp] 357 / 4e-110 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10029802 [exp] 330 / 4e-100 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039315 [exp] 321 / 2e-96 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10004365 [exp] 316 / 6e-95 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10039732 [exp] 305 / 3e-91 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G102500 [exp] 1027 / 0 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1) Potri.016G102600 [exp] 1019 / 0 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.016G102700 [exp] 1018 / 0 AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) Potri.016G102900 [exp] 1016 / 0 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1) Potri.006G091400 [exp] 1009 / 0 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1) Potri.013G095800 [exp] 643 / 0 AT2G19130 350 / 2e-108 S-locus lectin protein kinase family protein (.1) Potri.013G096400 [exp] 638 / 0 AT2G19130 347 / 2e-107 S-locus lectin protein kinase family protein (.1) Potri.013G086100 [exp] 613 / 0 AT4G00340 300 / 1e-89 receptor-like protein kinase 4 (.1) Potri.013G096000 [exp] 563 / 0 AT2G19130 300 / 1e-90 S-locus lectin protein kinase family protein (.1) Potri.013G115700 [exp] 378 / 3e-118 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10032944 pacid=23160422 polypeptide=Lus10032944 locus=Lus10032944.g ID=Lus10032944.BGIv1.0 annot-version=v1.0 ATGAAGTCACTTCTTCTGATTTCTCTGTTCCAAGTCTTCAAATTTCGTAATCCACCAGCAGGGGGAAAAATGGAAAAGCTCCGAACTTGTAAAGCTCCAA CCTTGTTCATCATCCTCTGTGGCTTTGCCATCCTAATTCTATTCCCTCATGGGATTTCCTCACAGCCCAGCAACAACCAAAACTCCCAGCTCCACAGAGG CTCAACCCTGTCAGTAGAATCACAAACAACAAACTTCCTCATTTCCCCAGACAAAACCTTCACTTGCGGCTTCTACGTCGTAGGCCAAAACGCCTACTGG TCAATCTGGCTCACAGACTCCGCCGACCGAACCGTGGTCTGGACCGCCAACAGAAACAGACCGGTCAACGCCAAAGGCTCCAAACTTTCCTTCCGTCCAA ACAGCGGCATAGCCTTAACCAACGTCGACGGCTTCGTCGTCTGGGAGACCAACAAAACCCCCACCGACGCTTCCCTCGCCGAGCTTCTCAACTCCGGAAA CCTCGTCCTCAAGAACCCCCAAGGTAAAATTCTCTGGCAGAGCTTCGATTCCCCAACCGACACTCTTCTCTCAACCCAGCTCTTCACAAAGAGTTCGAGT TTGGTCTCGAATTTGGGTTTAGGGGACTACGGGTCGGGTTATTTCAACTTCCTTTTCGATGACGACAACACATTGAGGATGATCTACGACGGCCCCGACT TTTCAAGCATTTACTGGCCTAATCCCGATTTCAGTCTTTTCCAAAACGGACGGACAAATTACAACAGTAGCAGGAGTGCGTTGCTTGATGAGATGGGGAG TTTTGTCTCTAGTGATAGCTTATGGTTTAGCGCTTCTGATTACGGTCTTAACGGCGTTAAAAGGAGGTTAACGGTGGACTCTGACGGAAACTTAAGGCTT TATAGCTTGAATAGTTTGACCGGGTCGTGGGTGATTTCGTGGCAGGCGATTGATAATCTGTGTAGTGTTCATGGGATTTGTGGGAGAAATGGGATATGTT TGTATACTCCGATTCCTAAATGTTCATGTCCCCCTGGGTATCAAATCAACGATCCTAAAGATTGGAGTAAAGGGTGTAAACCGGTTTTTGAAAAATCATG TCTTTATAGGAATCAGGTCAAATTTCTCAAAGTTCCACATGTTGATTTCTGGGGGTTTGAACTGAATTTCAGCCAAAAAGTTTCGTTGGAGACTTGCATG GATCTTTGTTTGGACGACTGTCAGTGTGACGCGTTCAGCTATAGGCTCACCGGGGAGGCGGTATGTTATACGAAAAGTATACTGTTCAATGGCTACCGGT CTCCAGCCTTTAGGGGCGACATATACTTGAAGCTGCCACGGAGTGTTGATGTTGCAGAAGAAGAAGCTCTGAGTCTCGATGGGAGAGACATTGTTTGTGA AAACGGCAGATCAAGAATCGAGGTCAATTCTCAGTCTCTATATGAGATAGATACGAAGAGAGTGAGGTGGGTTTATCTCTACTCGTTCGCTTGCGCGATG GGCGCGATTGAGATCCTGTTGATAGGTATTGGTTGTTGGTTTCTTAACACAATGTTGAGGATGCCGGAATCGGTAGAGATGGGGTATCACACGATAGCGA GTCAGTTCAGGAGGTTTAGCTACAGAGAATTGAAGAAAGCGACCAAGAATTTCAAGGAAGAGCTCGGAAGGGGAGGGTCGGGGGTCGTATACAAGGGTGT TTTGGGCGACGAAAGGGTCGTGGCTGTGAAGAGGCTCGGAGATTCGTATCAAGGCGAAGATGTGTTATGGGCGGAAGTTACGACGATTGGGAAAATCAAC CATATGAATCTGGTGAGAATGTGGGGGTTTTGTTCCGAAAACCGGCATAGGATGTTGGTGTATGAGTATCTGGAGAATCAATCGCTAGATAACTATATTT TTTCGAGCGGGATGACCAACGTTCTCGAGTGGGAAGTGAGGTTCAAGGTTGCGCTGGGAACGGCGAAAGGTTTGGCTTATCTTCACCATGAGTGCCTGGA ATGGGTCATACATTGCGATGTGAAGCCCGAGAACATACTCTTGGACGACGACTTCGAGCCAAAGATTGCTGATTTCGGACTCGCGAAGCTGTCCCTGAGG GACAGCAACAGCTCTCACTTCACCAAGATCAGAGGGACAAAGGGGTACATGGCTCCGGAGTGGGCTTCCAATCTCCCTATTACGGCAAAAGTCGACGTCT ACAGTTATGGAGTTGTGATTCTTGAACTCGTGAAAGGAATCAGGCTCTCCAACATGGTTGAGGAGGAGGAGGAAGCTGAGCTGGCTAGGTTTATCAAAAT ATCCAGAGAAAAAATCATGTCTGGAGGAAAGTCGTGGGTTGGTGATCAAAAGATAGTGGATCCTAAGTTGAAAGGGAAGTTTAGCCATATACAGGCGGCA AAAATGGTCGAAATCGGGTTGTCTTGCGTTGATAAAGACAGAAACAAGAGGCCAACAATGGACATTGTAGTCCAATCTCTACTAGATTGTCAGGATTACA GGCCAAACTCAACTGTCCCTGAAGAATCATCATCATCATCATCCTCATCATATCCCTAG
AA sequence Show only first row Show all	>Lus10032944 pacid=23160422 polypeptide=Lus10032944 locus=Lus10032944.g ID=Lus10032944.BGIv1.0 annot-version=v1.0 MKSLLLISLFQVFKFRNPPAGGKMEKLRTCKAPTLFIILCGFAILILFPHGISSQPSNNQNSQLHRGSTLSVESQTTNFLISPDKTFTCGFYVVGQNAYW SIWLTDSADRTVVWTANRNRPVNAKGSKLSFRPNSGIALTNVDGFVVWETNKTPTDASLAELLNSGNLVLKNPQGKILWQSFDSPTDTLLSTQLFTKSSS LVSNLGLGDYGSGYFNFLFDDDNTLRMIYDGPDFSSIYWPNPDFSLFQNGRTNYNSSRSALLDEMGSFVSSDSLWFSASDYGLNGVKRRLTVDSDGNLRL YSLNSLTGSWVISWQAIDNLCSVHGICGRNGICLYTPIPKCSCPPGYQINDPKDWSKGCKPVFEKSCLYRNQVKFLKVPHVDFWGFELNFSQKVSLETCM DLCLDDCQCDAFSYRLTGEAVCYTKSILFNGYRSPAFRGDIYLKLPRSVDVAEEEALSLDGRDIVCENGRSRIEVNSQSLYEIDTKRVRWVYLYSFACAM GAIEILLIGIGCWFLNTMLRMPESVEMGYHTIASQFRRFSYRELKKATKNFKEELGRGGSGVVYKGVLGDERVVAVKRLGDSYQGEDVLWAEVTTIGKIN HMNLVRMWGFCSENRHRMLVYEYLENQSLDNYIFSSGMTNVLEWEVRFKVALGTAKGLAYLHHECLEWVIHCDVKPENILLDDDFEPKIADFGLAKLSLR DSNSSHFTKIRGTKGYMAPEWASNLPITAKVDVYSYGVVILELVKGIRLSNMVEEEEEAELARFIKISREKIMSGGKSWVGDQKIVDPKLKGKFSHIQAA KMVEIGLSCVDKDRNKRPTMDIVVQSLLDCQDYRPNSTVPEESSSSSSSSYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19130			S-locus lectin protein kinase ...		Lus10032944 [exp]	0	1
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	1.7	0.8495
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10011820 [exp]	2.2	0.8658
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	2.4	0.8567
AT4G37420			Domain of unknown function (DU...		Lus10030740 [exp]	3.5	0.8430
AT2G36430			Plant protein of unknown funct...		Lus10035569 [exp]	5.7	0.7323
AT5G25930			Protein kinase family protein ...		Lus10005491 [exp]	6.3	0.7844
AT2G23450			Protein kinase superfamily pro...		Lus10000741 [exp]	6.3	0.8357
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10012031 [exp]	7.5	0.8076
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036519 [exp]	8.0	0.7921
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10026409 [exp]	8.5	0.8176

Compare expression of checked genes

Lus10032944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.