Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17230 147 / 8e-40 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 145 / 5e-39 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G73080 145 / 6e-39 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT1G17750 144 / 1e-38 AtPEPR2 PEP1 receptor 2 (.1) AT5G48940 140 / 2e-37 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65710 139 / 5e-37 HSL2 HAESA-like 2 (.1) AT4G20270 136 / 6e-36 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 136 / 7e-36 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G63930 136 / 9e-36 Leucine-rich repeat protein kinase family protein (.1) AT1G08590 135 / 2e-35 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008849 [exp] 288 / 3e-89 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10039030 [exp] 147 / 2e-39 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10042090 [exp] 140 / 2e-38 AT5G56040 378 / 2e-121 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10025943 [exp] 143 / 3e-38 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10011761 [exp] 142 / 1e-37 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013968 [exp] 141 / 2e-37 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 139 / 8e-37 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10003503 [exp] 130 / 1e-36 AT1G72180 278 / 2e-87 Leucine-rich receptor-like protein kinase family protein (.1) Lus10009476 [exp] 138 / 2e-36 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G022800 [exp] 194 / 6e-56 AT1G73080 582 / 0.0 PEP1 receptor 1 (.1) Potri.019G078400 [exp] 149 / 4e-40 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G007600 [exp] 148 / 8e-40 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.001G053400 [exp] 144 / 2e-38 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.012G088100 [exp] 143 / 4e-38 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G256500 [exp] 142 / 5e-38 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.013G048800 [exp] 142 / 5e-38 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 142 / 6e-38 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G016600 [exp] 141 / 1e-37 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.003G174900 [exp] 141 / 2e-37 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10032945 pacid=23160369 polypeptide=Lus10032945 locus=Lus10032945.g ID=Lus10032945.BGIv1.0 annot-version=v1.0 ATGACCTCTGACCCCTCCATTGTCATTAATAGGGGGGAATTCGGGCCCATTCCCAAATTTCCAAACAGGTTGACTGGTGCTCTATCTGAGAAGATCGGTC AATCTCAACGACTGACGACTTTTGCTCTTTCTGATAATCAGTTAGTTGGCTCAATCCCTCCGTCGATTGGAAATCTCAAGGATCTGATTTACTTGTTTCT CTCCATCAACAGAATCAAATGGCTCTTTGCCTCCTCAGCTTGGTTGGATACCAACTTCATTGAAGGAGAAATTCCCTCTGAGATTTCGTTTCTTGAAAAC CTTGAGACTCTTTATCTGTTCACCAATGGAATTACTGGCGAAGTACCTTGGCAGCTCGGGAGATTGAAATGGCTAAATGTGTTAGCTCTCTATGAGAACA AACTGAGTGGTGAAATCCCGTCTGGAGGGACATTGTTTGACGTGTTGCACAAAGAGCAATCCTACTCAGTTTTGGATTGGGAGGATAGATTCCGCATTGC ACTTGGAATTGCCGAGTGTCAATCGTACCATCACCACGACTGTGTTCCTCAAATTATTCACAGGGATGTGAAATCAGACGATGTGCTTTTGGATTCAGAA TTCGAACCCAAAGTTGAAGACTTTGGAATGGCGAAGTTAGCTGATGATCATAATCTTGACGGTGGCGATGAGTCCAACGCAACTGTGTCTAAGATTGTTG GCACACTTGGGTACATGGCTCCAGAAAATGCATATTCGACGGAGAAGATTGATGTGTCCAGCTATGGGGTGATTTTGCTGGAGCTGGTGAGCAGGAAACT GCCAGTTGATCCCAGCTTTGAGGAAGGGGAGGACATTGTTTGTTGGGCAAAGAAGAATGTGGAAGCTCATCATTAA
AA sequence Show only first row Show all	>Lus10032945 pacid=23160369 polypeptide=Lus10032945 locus=Lus10032945.g ID=Lus10032945.BGIv1.0 annot-version=v1.0 MTSDPSIVINRGEFGPIPKFPNRLTGALSEKIGQSQRLTTFALSDNQLVGSIPPSIGNLKDLIYLFLSINRIKWLFASSAWLDTNFIEGEIPSEISFLEN LETLYLFTNGITGEVPWQLGRLKWLNVLALYENKLSGEIPSGGTLFDVLHKEQSYSVLDWEDRFRIALGIAECQSYHHHDCVPQIIHRDVKSDDVLLDSE FEPKVEDFGMAKLADDHNLDGGDESNATVSKIVGTLGYMAPENAYSTEKIDVSSYGVILLELVSRKLPVDPSFEEGEDIVCWAKKNVEAHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17750		AtPEPR2	PEP1 receptor 2 (.1)		Lus10032945 [exp]	0	1
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10025794 [exp]	2.2	0.7693
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016317 [exp]	8.0	0.7667
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10040602 [exp]	9.2	0.7453
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10021416 [exp]	12.2	0.6844
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10031545 [exp]	13.4	0.7016
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	19.5	0.7161
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10020819 [exp]	20.1	0.6931
					Lus10010387 [exp]	21.2	0.6362
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012691 [exp]	21.5	0.6891
					Lus10006537 [exp]	23.4	0.6372

Compare expression of checked genes

Lus10032945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.