Plant FIBer expression Database

Lus10032948 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53620 549 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008846
[exp]
1456 / 0 AT5G53620 594 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G023200
[exp]
1014 / 0 AT5G53620 583 / 0.0 unknown protein
Potri.015G006700
[exp]
1004 / 0 AT5G53620 528 / 6e-178 unknown protein
Potri.016G069900
[exp]
111 / 5e-29 AT5G53620 114 / 5e-31 unknown protein
PFAM info
Representative CDS sequence
>Lus10032948 pacid=23160324 polypeptide=Lus10032948 locus=Lus10032948.g ID=Lus10032948.BGIv1.0 annot-version=v1.0
ATGGAGGCCACGGCTGGTGTCGCCGCCTCCCGCGGTGGTCCTCTGCCGATGACTTCGTCCTCGAGGAAGGAGTGGCGTGCCGTTGCTGACCACCATTCTC
TTCGAAATCCTAGTGACGGGGAGTTGGAACGTTCCAAGTTAGGGCAGACAGATGAGAGGACAATCTATGAGGTGCAGCATGGGAGAGAGCCTGTTGATGT
TGATTTCTGCTCTATTACCGTTGATGGGAGTCTGGGAAATGACATTTTGGGTCAGCGAGTTCATGCTGTTGCCAGACAAAGAGAAGAGCTGCAACAAATG
GAAATTGAGCTGAAAGCTCAGATGATTGCTAGGTCCGAGATCATGGAGATGCAAAATAGCTTTGATTCCCAAATCAAAGAACATGGGGAATCTACTTTGA
AGCTTCAGGAAAAACTCCACGAGAGGGAGCAGACAATACATGATCTGGAAAGAAGAATTGAAGAGAAGGCCAGGGAGTTGCATGCTGTGAAATTGGATAG
TGAGGCGGCATGGGCCAAAGAGGACCTTCTCAGAGAGCAAAATAAAGAACTTGCTACCTTCAGAAGGGAGCGTGATCACTCTGAAGCTGAAAGAACACAA
CACATACAGCAAATACATGAACTTCAAGAACATGTCCAAGAGAAAGAGAGACAGATTATTGAGTTGCAAGATCAGCATAGGGTTGATCAGGAGACCATTT
ACCTGAAGGACGAACAATTGAAAGTGTGGATAGCACGTGTCCAGGAGATGGATGTTATGCAATCTAGTTTACAAGCTGAGCTACGTGAGCGGATTGAGCA
ATATAATCAGCTATGGGTTGGCTGTCAAAGACAGTTTGCAGAGATGGAGAGACTTCATGTACATACCATACAACAGCTTCAGCTGGAGCTGACTGATGCT
AGAGATAGGGCTGGATCTTACTCTGACGAGTCACGTCTTTCTCAAACAAACTCAAATGATGCAACGAAGTTTGGTCAGAATGCTGGAAACCAAATAGATG
TGAATGGAAGTGGTGTATCAGGTGCTGATAACGGAGTACGTTCAAATGGGAATGCTGATAGTGTCACATCATATGCTTCATCTGCAAATTTAGCGAGTCA
GGCCAACCATGTTGCCAGCTTGCCAATATCTCCATCCTCTTTACTGGGAATGCCTACCTATCTCCCACCAGGTCAAATGACGGCACTGCATCCATTCATT
CTGCATCAACAGGGAATTCCTCATTCTATGCCATCTCACGTTCACCAGCCTCAAGTTGGACATTTTCACTCTGTTCAAGCAATGTCTTCCGTCCCTCAGT
GGCAGAGTCAGCAGGCCGTTTCAGAGGTGTCACAGGCATCTAGTCAGAATACACTTGAACCATCTCACAGTGAGCAGAATCTTGATAGACCAGAAGCAAA
GTACTATGACATGTCTGTTAATGGGCAGGGGTTTCAATCACATTATCTAGATGTTCACATTAACCAAGGAATGCAACCTGATTCTGCAATCCCACCATCT
AGTGTCAACCAACAGGTTCTTGAATCAATTGATAGAAGTTACTTGGCTGGGAGTCAGCCGTATCAAAACTTGCAACATATTTCTGCACAATTTAGTGAGG
CCTTGCGATTAAACCCGCTGGAGCAGAAAAGTGAACCACAGGAGCAGAATGTTGTTAACTTGGCTAATGATGGACTAGACAGACAAATCTTGCCTGAAGA
AAAACCGAGCTCTGCTAGCAGTGGTTCACTCTCTGAACCACCAGTTCACCACTCAGTTACCCTCGGTGAAACAGTCATCAATAATGGCACTGGAAAAACT
CTCCCTGAAGCTTTATTGCCAACCGGACAGACAAATATCACACCTGCTGTGAAGATACCGGAGCCTGCACTTATTGATGAAAGATCCCTTTTGGCTTGCA
TAGTTCGAACAATTCCAGCTGGGGGTAGAATTCGTATAAATTCAACGCTGCCGAACAGGTTAGGGAAGATGATTGCACCTTTACATTGGCATGACTACAA
GAGACAGTATGGGAAACTTGATGACTTTGTTGCCGGCCACCCTGAGTTGTTCTTGGTTGAAGGAGAGTTTATTCAGCTAAGAGAAGGTGCACAGGAGATG
ATAGCTGCTACTGCAGCTGTTGCAAAAGTGGCTGCTGCTGCTGCTGCTTCAACACCTTACTCATCATTCTTGCCCGCCATGTCTGTCACTCCAATGGCGC
AGTCTCACCGAATGAAGAAGTTTCCTTCTACCGACTCCAACCGCGTAAATGGTGTAAGTTTTGGTGGTCCCGGGGGAATGTCAAATGTGAAAATATTGAG
CAAATCAAAGGATTCTCAGGAAATGAATGGAGCTGATACCGAAAGAAGTGGTGTGAGCAGTGGGCAGAACAAAAGCGCAAGTCAGGGAAGGCCTAATTCA
GGTTTCATTGGGAAGCAACAAGGAAGGGTGCCTACTTCTAGATGA
AA sequence
>Lus10032948 pacid=23160324 polypeptide=Lus10032948 locus=Lus10032948.g ID=Lus10032948.BGIv1.0 annot-version=v1.0
MEATAGVAASRGGPLPMTSSSRKEWRAVADHHSLRNPSDGELERSKLGQTDERTIYEVQHGREPVDVDFCSITVDGSLGNDILGQRVHAVARQREELQQM
EIELKAQMIARSEIMEMQNSFDSQIKEHGESTLKLQEKLHEREQTIHDLERRIEEKARELHAVKLDSEAAWAKEDLLREQNKELATFRRERDHSEAERTQ
HIQQIHELQEHVQEKERQIIELQDQHRVDQETIYLKDEQLKVWIARVQEMDVMQSSLQAELRERIEQYNQLWVGCQRQFAEMERLHVHTIQQLQLELTDA
RDRAGSYSDESRLSQTNSNDATKFGQNAGNQIDVNGSGVSGADNGVRSNGNADSVTSYASSANLASQANHVASLPISPSSLLGMPTYLPPGQMTALHPFI
LHQQGIPHSMPSHVHQPQVGHFHSVQAMSSVPQWQSQQAVSEVSQASSQNTLEPSHSEQNLDRPEAKYYDMSVNGQGFQSHYLDVHINQGMQPDSAIPPS
SVNQQVLESIDRSYLAGSQPYQNLQHISAQFSEALRLNPLEQKSEPQEQNVVNLANDGLDRQILPEEKPSSASSGSLSEPPVHHSVTLGETVINNGTGKT
LPEALLPTGQTNITPAVKIPEPALIDERSLLACIVRTIPAGGRIRINSTLPNRLGKMIAPLHWHDYKRQYGKLDDFVAGHPELFLVEGEFIQLREGAQEM
IAATAAVAKVAAAAAASTPYSSFLPAMSVTPMAQSHRMKKFPSTDSNRVNGVSFGGPGGMSNVKILSKSKDSQEMNGADTERSGVSSGQNKSASQGRPNS
GFIGKQQGRVPTSR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G53620 unknown protein Lus10032948
[exp]
0 1
AT5G27550 P-loop containing nucleoside t... Lus10029914
[exp]
7.7 0.9444
AT1G06220 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST ... Lus10034111
[exp]
11.4 0.9330
AT5G51660 CPSF160, ATCPSF... cleavage and polyadenylation s... Lus10031111
[exp]
11.8 0.9325
AT5G42970 FUS4, EMB134, C... FUSCA 8, FUSCA 4, EMBRYO DEFEC... Lus10010816
[exp]
12.3 0.8953
AT3G23890 ATTOPII, TOPII topoisomerase II (.1.2) Lus10019720
[exp]
12.8 0.9356
AT5G13480 FY Transducin/WD40 repeat-like su... Lus10020214
[exp]
18.2 0.8759
AT1G69770 CMT3 chromomethylase 3 (.1) Lus10014315
[exp]
18.7 0.9322
AT3G49600 SUP32, ATUBP26,... ubiquitin-specific protease 26... Lus10029686
[exp]
20.4 0.8934
AT1G18370 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIV... Lus10042952
[exp]
21.5 0.9310
AT5G18700 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013,... Lus10033979
[exp]
22.0 0.9302

Lus10032948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.