Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46690 96 / 2e-26 SAUR-like auxin-responsive protein family (.1) AT4G00880 91 / 4e-24 SAUR-like auxin-responsive protein family (.1) AT3G61900 84 / 2e-21 SAUR-like auxin-responsive protein family (.1) AT5G53590 77 / 2e-18 SAUR-like auxin-responsive protein family (.1) AT4G34800 70 / 2e-16 SAUR-like auxin-responsive protein family (.1) AT4G34780 68 / 2e-15 SAUR-like auxin-responsive protein family (.1) AT4G34770 68 / 2e-15 SAUR-like auxin-responsive protein family (.1) AT4G38850 64 / 3e-14 SAUR-AC1, ATSAUR15, ATSR15AU, SAUR15, SAUR_AC1 SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA, ARABIDOPSIS COLUMBIA SAUR GENE 1, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-like auxin-responsive protein family (.1) AT4G34790 65 / 4e-14 SAUR-like auxin-responsive protein family (.1) AT3G60690 66 / 6e-14 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008845 [exp] 157 / 3e-50 AT2G46690 102 / 4e-29 SAUR-like auxin-responsive protein family (.1) Lus10010110 [exp] 90 / 1e-23 AT2G46690 124 / 1e-37 SAUR-like auxin-responsive protein family (.1) Lus10012181 [exp] 71 / 3e-16 AT4G34770 97 / 3e-27 SAUR-like auxin-responsive protein family (.1) Lus10007560 [exp] 69 / 7e-16 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10007564 [exp] 69 / 7e-16 AT4G34770 97 / 3e-27 SAUR-like auxin-responsive protein family (.1) Lus10012185 [exp] 67 / 2e-15 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10030295 [exp] 67 / 2e-14 AT2G45210 131 / 1e-39 SAUR-like auxin-responsive protein family (.1) Lus10009620 [exp] 65 / 2e-14 AT4G38840 112 / 5e-34 SAUR-like auxin-responsive protein family (.1) Lus10025909 [exp] 65 / 3e-14 AT4G34770 116 / 3e-35 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G023400 [exp] 102 / 1e-28 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 97 / 1e-26 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 94 / 1e-25 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.002G176400 [exp] 90 / 8e-24 AT2G46690 145 / 2e-46 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 72 / 8e-17 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.009G126700 [exp] 64 / 6e-14 AT4G38840 126 / 3e-39 SAUR-like auxin-responsive protein family (.1) Potri.014G066900 [exp] 65 / 8e-14 AT3G60690 191 / 9e-63 SAUR-like auxin-responsive protein family (.1) Potri.009G126900 [exp] 63 / 1e-13 AT4G38840 131 / 1e-41 SAUR-like auxin-responsive protein family (.1) Potri.002G145300 [exp] 64 / 3e-13 AT3G60690 174 / 4e-56 SAUR-like auxin-responsive protein family (.1) Potri.004G165450 [exp] 61 / 6e-13 AT4G38840 129 / 2e-40 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10032949 pacid=23160429 polypeptide=Lus10032949 locus=Lus10032949.g ID=Lus10032949.BGIv1.0 annot-version=v1.0 ATGGAAAGTAATACAACCGGATCTGAGATCGATCGTCATCGCCAGAACAGCGCCATGATTACTACTACAACTGCTTCTGCTGATACGGACGGCGGTGGAA AACAGAGTCATCACCACTTTCACTTCCACATCCATTTCCCGCATCTGGATCTGTTCCACCACCACCACCACCACCACCAGAACGGGCCGAAGAAAGGGAG GGTGGCTATAATAGTAGGGGAAGAAGGAGAGGAGCAGCAGAGGTTCGTGATTCCGGTGATTTACATAAACCACCCGCTGTTCCACCGCCTTCTCAAGGTT GCGGAGGATGAATTCGATTTCCAGTACAAGGAAGGCCCCATCACAATCCCTTGCCACGTGGAGGAATTCCGCAACATCCAGGGCTTGATCGACCAGGATC AGAACAATCACCACCACCACCACCACCACCATCTGTTATGCTTCTGGGTTTGA
AA sequence Show only first row Show all	>Lus10032949 pacid=23160429 polypeptide=Lus10032949 locus=Lus10032949.g ID=Lus10032949.BGIv1.0 annot-version=v1.0 MESNTTGSEIDRHRQNSAMITTTTASADTDGGGKQSHHHFHFHIHFPHLDLFHHHHHHHQNGPKKGRVAIIVGEEGEEQQRFVIPVIYINHPLFHRLLKV AEDEFDFQYKEGPITIPCHVEEFRNIQGLIDQDQNNHHHHHHHHLLCFWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00880			SAUR-like auxin-responsive pro...		Lus10032949 [exp]	0	1
AT1G17620			Late embryogenesis abundant (L...		Lus10003824 [exp]	1.0	0.9153
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	2.0	0.9016
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Lus10020107 [exp]	2.6	0.8865
AT3G55420			unknown protein		Lus10040295 [exp]	3.0	0.8846
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	3.2	0.9060
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	3.5	0.8903
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	4.9	0.9023
AT5G56150		UBC30	ubiquitin-conjugating enzyme 3...		Lus10016670 [exp]	6.3	0.8854
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10017313 [exp]	7.7	0.8653
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10014729 [exp]	8.7	0.8608

Compare expression of checked genes

Lus10032949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.