Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46680 128 / 3e-36 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) AT3G61890 125 / 4e-35 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1) AT4G40060 112 / 1e-29 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT5G65310 110 / 6e-29 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT2G22430 107 / 8e-28 HD ATHB6 homeobox protein 6 (.1) AT3G01470 102 / 4e-26 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G69780 98 / 3e-24 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT3G01220 94 / 8e-23 HD ATHB20 homeobox protein 20 (.1) AT5G15150 94 / 1e-22 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT1G26960 91 / 1e-21 HD ATHB23 homeobox protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008840 [exp] 403 / 2e-144 AT2G46680 140 / 5e-41 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10030214 [exp] 140 / 1e-40 AT2G46680 208 / 5e-67 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10023159 [exp] 107 / 7e-28 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10005997 [exp] 102 / 4e-26 AT2G46680 162 / 7e-49 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10008795 [exp] 101 / 2e-25 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 100 / 2e-25 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037200 [exp] 100 / 3e-25 AT1G69780 319 / 2e-109 Homeobox-leucine zipper protein family (.1) Lus10036730 [exp] 100 / 8e-25 AT1G69780 325 / 9e-112 Homeobox-leucine zipper protein family (.1) Lus10030800 [exp] 98 / 2e-24 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G023700 [exp] 149 / 2e-44 AT2G46680 147 / 4e-43 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.002G176300 [exp] 148 / 4e-44 AT2G46680 219 / 1e-71 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.014G103000 [exp] 145 / 6e-43 AT2G46680 237 / 1e-78 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.001G083700 [exp] 112 / 8e-31 AT2G46680 132 / 3e-38 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.007G097100 [exp] 112 / 1e-29 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.005G071900 [exp] 111 / 5e-29 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.010G093400 [exp] 99 / 1e-24 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.017G081700 [exp] 98 / 3e-24 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.015G065400 [exp] 97 / 5e-24 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 97 / 1e-23 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10032952 pacid=23160338 polypeptide=Lus10032952 locus=Lus10032952.g ID=Lus10032952.BGIv1.0 annot-version=v1.0 ATGAGTGAAACAGAGTTCCGTCCAGAAGCACCAGATGCAAAGTCTGAAACTTTGGAGCCACCACCCCAAGCACCGAAGAAAAGGAAAGGAAGCAGCAACA GCAAGAGCAAAAGAAGATTCAGTGATGAACAGATCAAGTCGTTGGAGTCATTCTTCGAGTCAGATACGAAGCTTGAGCCAAGGAAGAAGACTCTGATTGC GAAAGAGCTCGGGCTTCAACCTCGCCAAGTTGCTATATGGTTCCAGAACAAGAGAGCTAGATGGAGGTCAAAGCAAATTGAGAAAGACTACAAGTTGTTG AAGGCTGATTATGACAGCCTAGCATCTCGTTTCGAGTCTTTACAGAATGAGAGGCAGTCGCTACTCTTACAGTTCGAGAACTTGAATGCACTGGTTGAGA AAACATGGGGAGGAGATGCCGACATCTGCAAGAACCTTGAAGGAAGTGGTCAAGTCATAGGTTCAGATGATAAAACCATTTTTGAGCCTGAAGTGCCTCA AGTAATACAGAACAAAGTATACACAAGTTCACAGAGCTCACAGTATGACGGAGTCCAGCTAATGGACAAGTTCCACACTTCAACGGAAGGCTCATTGGCA GCAGCACAGGAGAAATGGTGCAGTCTTAACTCAAGCTATCAATTTGACCTACCTTATGGAAGTTCACAAGGGCTCAACTTCTGGTGTTGA
AA sequence Show only first row Show all	>Lus10032952 pacid=23160338 polypeptide=Lus10032952 locus=Lus10032952.g ID=Lus10032952.BGIv1.0 annot-version=v1.0 MSETEFRPEAPDAKSETLEPPPQAPKKRKGSSNSKSKRRFSDEQIKSLESFFESDTKLEPRKKTLIAKELGLQPRQVAIWFQNKRARWRSKQIEKDYKLL KADYDSLASRFESLQNERQSLLLQFENLNALVEKTWGGDADICKNLEGSGQVIGSDDKTIFEPEVPQVIQNKVYTSSQSSQYDGVQLMDKFHTSTEGSLA AAQEKWCSLNSSYQFDLPYGSSQGLNFWC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10032952 [exp]	0	1
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	4.1	0.9679
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10009808 [exp]	6.0	0.9616
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10043007 [exp]	10.1	0.9559
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Lus10018723 [exp]	14.0	0.9561
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	14.3	0.9562
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	15.5	0.9598
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	16.1	0.9519
AT4G19160			unknown protein		Lus10025855 [exp]	19.8	0.9475
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	20.1	0.9556
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	20.2	0.9506

Compare expression of checked genes

Lus10032952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.