Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56040 1303 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 1277 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 914 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 850 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G34110 751 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 602 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G63930 598 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 572 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 514 / 1e-164 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT5G44700 511 / 5e-161 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011756 [exp] 870 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 833 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 833 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10017782 [exp] 759 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000509 [exp] 754 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023677 [exp] 589 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10036251 [exp] 503 / 3e-158 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10019036 [exp] 497 / 6e-158 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 496 / 7e-158 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164800 [exp] 1433 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G467300 [exp] 1419 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.012G088100 [exp] 1037 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.015G080800 [exp] 1027 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G188700 [exp] 879 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G175700 [exp] 874 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 860 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.002G070900 [exp] 843 / 0 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G198000 [exp] 763 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 723 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032954 pacid=23160335 polypeptide=Lus10032954 locus=Lus10032954.g ID=Lus10032954.BGIv1.0 annot-version=v1.0 ATGCCTCCTCCACCACCTCAATCAAATCTCTTCTCCTCCATAACTCTCCTCTTCCTCCTCTTCCTCTTTCACAGTTGCTACTCCATTGATCCACAAGGTC AATCCCTCCTAACATGGAAACAAACCCTCAATTCTTCCTCATCTGCCCTCAGCTCATGGAACCCATCCCATCCAAATCCATGCACTTGGTTCGGAATCCG CTGCAACTCCAACTACCAAGTCATAGAGCTCACTTTAAGAGACGTCAATCTACAAGGTCCATTGCCACCCAACCTTCACTCCCTTACCAACTTACACTCC ATCGTCCTCTCCTCCACAAACCTCACCGGCTCAATCCCAAAGCAGTTCGGAGACTACACACACCTCACTTTACTTGATCTTACCGACAATTCCCTCTCCG GTGAAATCCCATTCGAAATTTGTAAGCTTTACAATTTGCAGACCTTGGCGCTCAACACCAACCTCTTCGAAGGTGCCATCCCCTCCCAAATCGGAAACCT TTCCAGTTTAATCACTCTCACTCTCTACGATAACCAGCTTAGTGGTGAGATTCCCACGAGCATTGGCTCCTTGACCACCCTTGAGATTTTCAGAGCCGGA GGTAACAGGAATCTCAAAGGACAAGTTCCATTCGAGATTGGGAATTGTTCCGAATTGGTTATCCTTGGTCTTGCTGAGACCGGCATTTCTGGGGAGCTTC CACCCTCCATTGGAATGCTCAAAAAGCTTCAAACTTTAGCGATTTACACTTCCTTACTGTCAGGTCCAATCCCTGAACAAATTGGCAACTGTACCCAGCT TCAGAATCTGTTTCTTTACCAGAATTCCATCTCTGGGTCGATCCCCACGCAAATTGGGCAGCTCCGGAAGCTCCAGAGCTTGCTTCTATGGCAGAATAGC TTAGTGGGTTCCATCCCAGACGAGCTTGGGAAATGTACGGAGCTCAACGTCATCGATTTGTCGGAGAATCTCTTGACAGGAGCCATACCAAGAAGTTTCG GAAGGATTCCCAATCTCAAGGAGCTTCAGCTGAGTGTTAATCAGCTATCGGGGACGATTCCCCTCGAAATCTGTGACTGTCGAGGGTTGACCCATTTCGA GGTTGACAACAACAGAATCTCCGGCCAAATTCCCGCCCGTATCGGCAATTTGGAGAGCTTGACTCTGTTTTTCGCGTGGCAGAACAATTTGACCGGGACT GTTCCGGAGTCGATTTCCGATTGTCGAAATCTCCAGGCGCTTGATCTTTCCTACAACAGCCTTTTCGGGTCGATCCCTAACCGGATTTTCGCGCTTCAGA ATCTCACTAAGCTCCTCCTCCTTTCAAACCAATTTTCCGGGTTTATTCCGCCTGATATCGGGAATTGCTCAAGCTTGTACAGGGTAAGGCTGAACGGGAA CAGGTTAGGAGGCGCTATTCCGTCGGAGATCGGGAAGTTGAAGGAATTGAATTTCCTCGACCTGAGTAGCAACCGGCTCGTCGGAAAAATCCCTTCGGCG GTCTCCGGGTGTCAAAGTCTCGAGTTTCTCGATCTCCATTCCAATGGGATCGCCGGCTCACTTCCCGAGACTCTGCCTCCAAGCTTGCAATTGTTGGACG TTTCCAACAACCAGCTCACTGGGGTCTTGCCACGTGGAATCGGGTCGTTGACCGAATTGACGAAGCTCAACCTGGGCAAGAACCGGATTTCCGGAACCAT TCCGCCGGAGATATCATCCTGCAACAAGTTGCAGCTCCTCAACTTGGGAGACAACCGCCTCTCCGGCGACATCCCAAAAGAAATCGGCCAGATCCCGGCG CTGGAAATCTCACTCAACCTAAGCTGCAACCAATTCTCCGGCGAGATTCCGTCCCAATTCTCGGGACTCAACAAATTAGCCGTCGTCGACCTCTCCCATA ACGCTCTGAAAGGAAACCTCGACGCCTTGGAAGCAGGGTTTCAGAACCTCGTTTCCCTCAACATCTCTTCCAACGAATTCTCCGGCGAGCTACCCGACAC TCCGTTCTTCCGGGAACTCCCCATCGCTGATTTCGCCTCCAACAAAGGCCTGTACATCGCCGGCGGTGGAGAAACTTCCCCGGATGACCACGGCGGCAGG GGGAGGTCGGCGATGAAGCTGCTGACCTCTGTTCTTCTAAGTGCGAGCGCGGTACTTATTCTTCTGGCAATCTTTGCTTTGGTTCGCGGGCGGGTTAGCT ATTCGGTGGACGAGTCGATGATGATGAAGATGGAAGACGTAAACGGTCATTGGGAAATGACACTGTACCAGAAGATGGAGCTGTCCATTGACGAGATTGT GAAAAACCTGATATCAGCGAATGTGATTGGGAACGGAAGCTCGGGAGTAGTGTACAAAGTGATTACTTCCAAAGGGGAGACTCTAGCGGTGAAGAAAATG TGGTCAGGTGACGAATCAGGAGCATTCAATTCCGAAATAAGAACGCTCGGATCGATCAGGCACAGGAACATTGTGCGGTTGCTTGGTTGGGGATCCAATA ATAGGAATGTGAAACTGTTGTTCTATGATTACCTTCCCAACGGAAGTTTGAGCTCCCTCCTCCATGGTGCCGGTGTTGCGAAATTTGTCGGAATCGAGTG GGAGATGAGGTACGATGTGGTGGTCGGTGTTGCGCACGCGCTTGCTTATTTGCATCATGATTGTGTCCCAGCTATACTCCATGGTGATGTTAAGGCTATG AATGTGTTGTTGGGTCGGGACTATGAAGCTTACTTGGCTGATTTCGGGCTTGCAAGAGTCACGAATCATATCGGCAGCCATGATCATGATGATGATGTTG ATAATGGTGAGGGTGGTTCGTCTAAGTCCAAGCCAAGTCCTAGGCCACTTCTAGCCGGCTCATATGGATACATGGCTCCAGAACACGCGTCGATGCAAAA AATAACAATTAAGAGCGATGTGTACAGTTTTGGAGTTGTGGTACTTGAGGTACTAACGGGGAGGCACCCGTTGGATCCAACACTGCCGGGAGGTGCACAT TTGGTGGAGTGGGTGAGGGAGCATTTGATTAGTAAGAAGAACCCGAGTGACATACTGGACCCGAAGCTGAGAGGGAGATCAGATCCTACGATGCACGAGA TGTTGCAGACTCTAGCTGTATCATTCCTGTGCATCAGCACCAGGGCAGCTGATAGACCATCGATGAACGATGTGGTTGCTATGCTAAAGGAGATTCGGCA TGAGGAAACAACAGCAAGGCCATCGGAGCAAAAGGGTTACGTTCCAACGTCCACAGCTGCTGCTGCTGCTACGCGGACACCGAGTAGAAACATTCAAGTG TCGCAAACTTCCTCTCACTGCTCATTTGCTTTCTCTGACGACTCCGTCTGA
AA sequence Show only first row Show all	>Lus10032954 pacid=23160335 polypeptide=Lus10032954 locus=Lus10032954.g ID=Lus10032954.BGIv1.0 annot-version=v1.0 MPPPPPQSNLFSSITLLFLLFLFHSCYSIDPQGQSLLTWKQTLNSSSSALSSWNPSHPNPCTWFGIRCNSNYQVIELTLRDVNLQGPLPPNLHSLTNLHS IVLSSTNLTGSIPKQFGDYTHLTLLDLTDNSLSGEIPFEICKLYNLQTLALNTNLFEGAIPSQIGNLSSLITLTLYDNQLSGEIPTSIGSLTTLEIFRAG GNRNLKGQVPFEIGNCSELVILGLAETGISGELPPSIGMLKKLQTLAIYTSLLSGPIPEQIGNCTQLQNLFLYQNSISGSIPTQIGQLRKLQSLLLWQNS LVGSIPDELGKCTELNVIDLSENLLTGAIPRSFGRIPNLKELQLSVNQLSGTIPLEICDCRGLTHFEVDNNRISGQIPARIGNLESLTLFFAWQNNLTGT VPESISDCRNLQALDLSYNSLFGSIPNRIFALQNLTKLLLLSNQFSGFIPPDIGNCSSLYRVRLNGNRLGGAIPSEIGKLKELNFLDLSSNRLVGKIPSA VSGCQSLEFLDLHSNGIAGSLPETLPPSLQLLDVSNNQLTGVLPRGIGSLTELTKLNLGKNRISGTIPPEISSCNKLQLLNLGDNRLSGDIPKEIGQIPA LEISLNLSCNQFSGEIPSQFSGLNKLAVVDLSHNALKGNLDALEAGFQNLVSLNISSNEFSGELPDTPFFRELPIADFASNKGLYIAGGGETSPDDHGGR GRSAMKLLTSVLLSASAVLILLAIFALVRGRVSYSVDESMMMKMEDVNGHWEMTLYQKMELSIDEIVKNLISANVIGNGSSGVVYKVITSKGETLAVKKM WSGDESGAFNSEIRTLGSIRHRNIVRLLGWGSNNRNVKLLFYDYLPNGSLSSLLHGAGVAKFVGIEWEMRYDVVVGVAHALAYLHHDCVPAILHGDVKAM NVLLGRDYEAYLADFGLARVTNHIGSHDHDDDVDNGEGGSSKSKPSPRPLLAGSYGYMAPEHASMQKITIKSDVYSFGVVVLEVLTGRHPLDPTLPGGAH LVEWVREHLISKKNPSDILDPKLRGRSDPTMHEMLQTLAVSFLCISTRAADRPSMNDVVAMLKEIRHEETTARPSEQKGYVPTSTAAAAATRTPSRNIQV SQTSSHCSFAFSDDSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56040			Leucine-rich receptor-like pro...		Lus10032954 [exp]	0	1
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10001282 [exp]	1.4	0.9503
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10027688 [exp]	4.5	0.9432
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	5.3	0.9469
AT2G27430			ARM repeat superfamily protein...		Lus10013918 [exp]	6.6	0.9154
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10020210 [exp]	8.1	0.9273
AT1G72230			Cupredoxin superfamily protein...		Lus10027043 [exp]	8.8	0.9375
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	9.0	0.9384
AT1G55210			Disease resistance-responsive ...		Lus10017228 [exp]	9.2	0.9419
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	10.6	0.9409
AT1G71710			DNAse I-like superfamily prote...		Lus10028727 [exp]	10.6	0.8931

Compare expression of checked genes

Lus10032954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.