Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13226 151 / 2e-41 regulatory protein RecX family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G467400 [exp] 162 / 1e-45 AT3G13226 198 / 5e-60 regulatory protein RecX family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02631 [flax] [poplar] RecX RecX family
Representative CDS sequence Show only first row Show all	>Lus10032955 pacid=23160343 polypeptide=Lus10032955 locus=Lus10032955.g ID=Lus10032955.BGIv1.0 annot-version=v1.0 ATGTCGTCGAAGGATGCTCCAGCGAGTCCTTTAGTGACATGCAAGCCCCAATCTGTAGATTTAAGAGGAAGAAGACCCGCCGGCAACGTCGGCGGCGGTG GAGAGACAGAGAGGAAGAGAAAGAACGCTGGACCATCTTGGATACTACTGAAATTCTGGAAGTTGAACAGCTCCCTAACTTCTCTCATTAGGGTTTTGGT GAATAGGTTAACGATGGCCGCGCTGGAGGCAAATTTCACATTCAGAATGTTCGTTGCTGCTCGGTCCATAGTCCAGACCAACCAGGCATTGACAGGTCAG AAGGTCCGGTGCTGTAGTGGGTCTTCAGATCCTGTTAGATACATTCCAAAGAAATCTTCCAGGGGAAATGAAGAAGGTTTTCTACCCGTGAAGGATTGCA ATAAGAGTGCATTTGATAAGATGTTTGATGGTGTGGAGAAACAATTTAGTTTAGATGAGAAAAATCAAAGTGAAAAGCCACGGCAGAAAAGGATGCCCAC TGCACAACAAGGTAAGGTCGATTACACCTCATCAGCCATGGATTATGAAGCCATTGAAGAGCAAGTGGAGTTTTCCATGGCAGAAGGAATCCAAATGAGT GGTTATACACAAGATAATCAATTGGTAGAAGATGCAAATAAAATGGCGATAAAATTTCTTGCTAAAAGTACTCCAGTTCTTTGTTCTTGTCATGCACCTT TGGTGAAACTAAGAAAATTGCAATCTCGCTGTATATTGCTTGCTCTTGGAGAAGCACTGACATCATTAGAGCTGAAAAAGAAATTGCAAGACAAGAAATT TCCTGCTGATGTCGTGGATTCTCTAGTAGCAAGTCTCCAGCACAGAGGATATGTGAATGATAGCTTATATGCCGAGTCATTTGCACGCTCTAGATGGTCT TCATTAAGTTGGGGACCCATGCGAATCAAGCAACACAATGGAAAGGATATACCATCTCCTTCTATACTTGCTAGGTTGTTTCTAGTGAATAATGCTGACA AAGACTCCAGGTGGAATGGTGGGCGACCTGGGGTATTGCTGAAGAAGGGAGTGAGTGAAGGAAATGCACAGAGTGCAATAAGAAATGTTTTCCAAGAAAC TGAACCCAGAACTCAGGAGTCTAGGGTCGAGTTGTCAAGTCCCTCCTTGAATCACTTATTGGCTCAAGCATCAAAACAATGGGCGAGAAGCCAGGATGTA CCCATACAGAAACGCAAGTCGAGAATGATCCGGTGGCTCCAGTACCGTGGTTTTGACTGGAGTGTAATATCCAGTGTGCTGGGGAAGTTAGAGTCGGGAA AACCTCCATAG
AA sequence Show only first row Show all	>Lus10032955 pacid=23160343 polypeptide=Lus10032955 locus=Lus10032955.g ID=Lus10032955.BGIv1.0 annot-version=v1.0 MSSKDAPASPLVTCKPQSVDLRGRRPAGNVGGGGETERKRKNAGPSWILLKFWKLNSSLTSLIRVLVNRLTMAALEANFTFRMFVAARSIVQTNQALTGQ KVRCCSGSSDPVRYIPKKSSRGNEEGFLPVKDCNKSAFDKMFDGVEKQFSLDEKNQSEKPRQKRMPTAQQGKVDYTSSAMDYEAIEEQVEFSMAEGIQMS GYTQDNQLVEDANKMAIKFLAKSTPVLCSCHAPLVKLRKLQSRCILLALGEALTSLELKKKLQDKKFPADVVDSLVASLQHRGYVNDSLYAESFARSRWS SLSWGPMRIKQHNGKDIPSPSILARLFLVNNADKDSRWNGGRPGVLLKKGVSEGNAQSAIRNVFQETEPRTQESRVELSSPSLNHLLAQASKQWARSQDV PIQKRKSRMIRWLQYRGFDWSVISSVLGKLESGKPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13226			regulatory protein RecX family...		Lus10032955 [exp]	0	1
AT4G00290			Mechanosensitive ion channel p...		Lus10018822 [exp]	1.4	0.8457
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10042100 [exp]	6.5	0.8406
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	6.6	0.8408
AT4G01270			RING/U-box superfamily protein...		Lus10005126 [exp]	7.1	0.8295
AT3G05250			RING/U-box superfamily protein...		Lus10004467 [exp]	8.9	0.7508
AT4G39380			unknown protein		Lus10033530 [exp]	9.2	0.8306
AT3G17430			Nucleotide-sugar transporter f...		Lus10018339 [exp]	9.2	0.7655
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034350 [exp]	9.5	0.7630
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Lus10027313 [exp]	11.3	0.7929
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	13.0	0.8152

Compare expression of checked genes

Lus10032955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.