Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26530 635 / 0 Aldolase superfamily protein (.1.2) AT4G26520 583 / 0 Aldolase superfamily protein (.1) AT2G36460 572 / 0 Aldolase superfamily protein (.1.2) AT3G52930 565 / 0 Aldolase superfamily protein (.1) AT5G03690 530 / 0 Aldolase superfamily protein (.1.2) AT4G38970 407 / 1e-141 FBA2 fructose-bisphosphate aldolase 2 (.1.2) AT2G21330 397 / 8e-138 FBA1 fructose-bisphosphate aldolase 1 (.1.2.3) AT2G01140 395 / 8e-137 PDE345 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014373 [exp] 582 / 0 AT2G36460 629 / 0.0 Aldolase superfamily protein (.1.2) Lus10023870 [exp] 579 / 0 AT2G36460 630 / 0.0 Aldolase superfamily protein (.1.2) Lus10027717 [exp] 540 / 0 AT3G52930 622 / 0.0 Aldolase superfamily protein (.1) Lus10035571 [exp] 531 / 0 AT5G03690 604 / 0.0 Aldolase superfamily protein (.1.2) Lus10035473 [exp] 392 / 9e-136 AT4G38970 671 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10031088 [exp] 392 / 2e-135 AT4G38970 674 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10005850 [exp] 317 / 1e-109 AT4G26530 261 / 4e-88 Aldolase superfamily protein (.1.2) Lus10013477 [exp] 305 / 2e-100 AT2G01140 481 / 1e-168 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10007940 [exp] 300 / 4e-100 AT2G01140 507 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G468100 [exp] 640 / 0 AT4G26530 629 / 0.0 Aldolase superfamily protein (.1.2) Potri.011G165000 [exp] 635 / 0 AT4G26530 628 / 0.0 Aldolase superfamily protein (.1.2) Potri.018G090100 [exp] 580 / 0 AT3G52930 620 / 0.0 Aldolase superfamily protein (.1) Potri.006G165700 [exp] 568 / 0 AT2G36460 634 / 0.0 Aldolase superfamily protein (.1.2) Potri.007G015500 [exp] 407 / 1e-141 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.009G124100 [exp] 404 / 1e-140 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.008G125900 [exp] 403 / 5e-140 AT2G01140 700 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.004G162400 [exp] 402 / 1e-139 AT4G38970 704 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.010G117900 [exp] 402 / 1e-139 AT2G01140 697 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF00274 [flax] [poplar] Glycolytic Fructose-bisphosphate aldolase class-I
Representative CDS sequence Show only first row Show all	>Lus10032956 pacid=23160368 polypeptide=Lus10032956 locus=Lus10032956.g ID=Lus10032956.BGIv1.0 annot-version=v1.0 ATGTCTGCTTTCGTTGGCAAGTATGCTGATGAGCTAATGAAGACAGCCAAGTACATAGCTACACCGGGAAAAGGAATCCTGGCCGCTGATGAGAGCACTG GCACAATAGGAAAACGGCTATCCAGCATCAACGTTGAGAACATAGAGTCAAACCGCCAAGCACTGAGGGAGCTCCTCTTCACATCCCCTGGCTCGCTCAC CTACCTCTCTGGTGTTATCCTTTTCGAGGAGACTCTATACCAGAAGACTACCGAGGGTAGGCCGTTCGTGGATTTGCTGAATGAGAACGGCGTCATTCCT GGTATCAAAGTTGACAAGGGTACCGTTGACCTTGCCGGAACCAACGGTGAAACCACCACCCAAGGGTTCGATTCTCTCGGGGCACGCTGCCAGCAGTACT ACAAGGCCGGTGCTAGATTCGCCAAGTGGAGGGCTGTGCTTAAGATTGGTCCAACCGAGCCGTCTGAGCTGTCCATCCAGCAGAACGCGCAGGGACTGGC CCGTTATGCAATCATCTGTCAGGAGAATGGGTTGGTTCCCATTGTCGAGCCTGAGATACTTACCGATGGTTCCCACGATATTGCCAAGTGCGCCGCCGCT ACCGAGATGGTACTGGCGGCGGTGTACAAGGCGCTGAATGAACAGCATGTTCTCCTTGAGGGTACTCTTCTCAAGCCTAACATGGTCACTCCTGGCTCCG ACTCCCCCAAGGTGACGGCAGAGGAGATAGCAGAGTACACGGTGAGGGCACTAAGGAGGACAGTTCCGCCGGCAGTGCCAGGGATAGTATTCCTTTCAGG GGGACAGAGTGAAGAGCAAGCAACGTTGAACCTTAACGCAATGAACAAGCTGCAAGTGCTGAAGCCATGGACTCTGTCATTCTCATTCGGCCGAGCACTC CAGCAAAGCACACTCAAGACATGGGGCGGCAAGAAAGACAATGTTGAGAAAGCTCAAGCTGCGTTCCTGGAGAGATGCAAGGCCAATTCGGAGGCCACCC TCGGTAAGTACTCCGGTGGATCCGACGCTACAGGCTTGGCCTCCGAGAGCTTGTATGTCAAGGCCTACAACTACTAG
AA sequence Show only first row Show all	>Lus10032956 pacid=23160368 polypeptide=Lus10032956 locus=Lus10032956.g ID=Lus10032956.BGIv1.0 annot-version=v1.0 MSAFVGKYADELMKTAKYIATPGKGILAADESTGTIGKRLSSINVENIESNRQALRELLFTSPGSLTYLSGVILFEETLYQKTTEGRPFVDLLNENGVIP GIKVDKGTVDLAGTNGETTTQGFDSLGARCQQYYKAGARFAKWRAVLKIGPTEPSELSIQQNAQGLARYAIICQENGLVPIVEPEILTDGSHDIAKCAAA TEMVLAAVYKALNEQHVLLEGTLLKPNMVTPGSDSPKVTAEEIAEYTVRALRRTVPPAVPGIVFLSGGQSEEQATLNLNAMNKLQVLKPWTLSFSFGRAL QQSTLKTWGGKKDNVEKAQAAFLERCKANSEATLGKYSGGSDATGLASESLYVKAYNY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26530			Aldolase superfamily protein (...		Lus10032956 [exp]	0	1
AT4G26530			Aldolase superfamily protein (...		Lus10005850 [exp]	1.0	0.9794
AT4G26530			Aldolase superfamily protein (...		Lus10005849 [exp]	1.4	0.9780
AT4G16950		RPP5	RECOGNITION OF PERONOSPORA PAR...		Lus10020525 [exp]	2.0	0.9487
AT5G51260			HAD superfamily, subfamily III...		Lus10038847 [exp]	2.4	0.9523
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10007837 [exp]	4.9	0.9312
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	6.0	0.9114
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042242 [exp]	7.1	0.9004
AT5G42760			Leucine carboxyl methyltransfe...		Lus10032713 [exp]	7.5	0.9330
AT3G29240			Protein of unknown function (D...		Lus10005224 [exp]	8.1	0.9113
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10011060 [exp]	8.1	0.9469

Compare expression of checked genes

Lus10032956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.