Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13310 107 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) AT2G17880 94 / 3e-25 Chaperone DnaJ-domain superfamily protein (.1) AT4G36040 85 / 1e-21 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT4G13830 64 / 9e-14 J20 DNAJ-like 20 (.1.2) AT1G56300 60 / 6e-12 Chaperone DnaJ-domain superfamily protein (.1) AT4G39960 61 / 1e-11 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G17830 61 / 2e-11 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G20560 60 / 2e-11 DNAJ heat shock family protein (.1) AT2G22360 60 / 3e-11 DNAJ heat shock family protein (.1) AT1G80030 59 / 4e-11 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017263 [exp] 87 / 2e-22 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10041906 [exp] 84 / 2e-21 AT4G36040 144 / 8e-45 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10028453 [exp] 83 / 9e-21 AT2G17880 146 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Lus10034484 [exp] 78 / 2e-19 AT4G36040 100 / 3e-28 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10025060 [exp] 73 / 2e-17 AT4G36040 102 / 7e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10002355 [exp] 68 / 1e-14 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10013558 [exp] 64 / 2e-14 AT4G36040 82 / 1e-21 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10003150 [exp] 67 / 3e-14 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10003149 [exp] 62 / 2e-12 AT4G13830 141 / 5e-42 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107600 [exp] 119 / 3e-35 AT3G13310 109 / 4e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G469600 [exp] 109 / 3e-31 AT3G13310 120 / 4e-35 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G166500 [exp] 100 / 1e-27 AT3G13310 115 / 4e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G001301 [exp] 99 / 4e-27 AT3G13310 102 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 92 / 3e-24 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020800 [exp] 90 / 1e-23 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G113100 [exp] 89 / 2e-23 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 86 / 5e-22 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G172300 [exp] 85 / 1e-21 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G131800 [exp] 79 / 8e-20 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10032957 pacid=23160404 polypeptide=Lus10032957 locus=Lus10032957.g ID=Lus10032957.BGIv1.0 annot-version=v1.0 ATGATGTCTTCAATTTCATTCTCAACCACCAACAGCGCCGCTCTACTTCCAACCACTACGCCTCGGTTCCGCACCCGACTTAACGCCAGGGCCTCCGTCG TCGGTGCAGTTCAAGTGGCCCACCAAAATTCAACGTCGCTGAGCCTGTACATGATTCTGAAGGTGGAGCGGACGGCATCGTTGAAGGAGATCAAGACCGC GTACAGGAAACTCGCTAAAGTTGTTCATCCTGACCGAGCAAATCACGACGGAGGGCGGGACTTCATCCAGGTTCATAATGCTTACCAGACGCTGTCGGAT CCACAGTCCAGAGCCATGTACGATTTATCCTTGGGGATACGGCTGCGCCCCGCTGGGTGTTGTTCGGCTGGTGGGTTTAATCGGACCCGGAAATGGGAGA CCGACCAGTGCTGGTAG
AA sequence Show only first row Show all	>Lus10032957 pacid=23160404 polypeptide=Lus10032957 locus=Lus10032957.g ID=Lus10032957.BGIv1.0 annot-version=v1.0 MMSSISFSTTNSAALLPTTTPRFRTRLNARASVVGAVQVAHQNSTSLSLYMILKVERTASLKEIKTAYRKLAKVVHPDRANHDGGRDFIQVHNAYQTLSD PQSRAMYDLSLGIRLRPAGCCSAGGFNRTRKWETDQCW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13310			Chaperone DnaJ-domain superfam...		Lus10032957 [exp]	0	1
AT4G02210			unknown protein		Lus10008312 [exp]	2.2	0.7740
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10019748 [exp]	4.2	0.7122
					Lus10031558 [exp]	5.7	0.7410
AT2G15220			Plant basic secretory protein ...		Lus10013860 [exp]	7.9	0.6304
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10003847 [exp]	14.1	0.6202
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030411 [exp]	17.0	0.6187
					Lus10027564 [exp]	18.7	0.6179
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033787 [exp]	20.8	0.6811
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041659 [exp]	23.5	0.6585
AT2G31500		CPK24	calcium-dependent protein kina...		Lus10025570 [exp]	23.7	0.6518

Compare expression of checked genes

Lus10032957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.