Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24650 224 / 6e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT3G49560 214 / 5e-69 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005289 [exp] 375 / 8e-132 AT5G24650 303 / 1e-103 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10015593 [exp] 244 / 4e-80 AT5G24650 218 / 3e-70 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032913 [exp] 219 / 7e-71 AT5G24650 234 / 6e-77 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G000600 [exp] 292 / 6e-100 AT5G24650 300 / 6e-103 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.012G004600 [exp] 283 / 2e-95 AT5G24650 262 / 2e-87 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family CL0003 [flax] [poplar] SAM PF00536 [flax] [poplar] SAM_1 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10032959 pacid=23160317 polypeptide=Lus10032959 locus=Lus10032959.g ID=Lus10032959.BGIv1.0 annot-version=v1.0 ATGGGAGACAGCAAGCAAGGCTTCACGTTGGCCAAAGTAAACTTCAACGATAATCCTTTTCAGTCCCTTCAGCACAAGTACAAGGAACTGGAGACCACCT TCAAAACTTGGGTGTCCCAGCAGTCAATTCCCGTCGAGGCTGCCATCGTCACAGCTACCGGCGCCATCCAGGGCGCTGCTATCGGCGGCCTCATGGGCAC CCTCACCGGCGAGATGGCCTCCCCGCTTTCTCCTCCTCCTCAGGCCTCCTTGAACCCTCAGGCCATGGCCTCTTTCAAGCAAGCCCAGGCACTTACAGGG GGTCCCTTGGCTCAAGCTCGCAACTTTGCTGTTATGACCGGGGCCAATGCTGGTATTGCTTGTGTTATGAAAAGGGTGAGAGGCAAGGAGGATGTCCAGT CCAGCCCCCATGTAATGCATGAAGCTTCCGTCTCCACGCTCACGGAGCAGTTAATCCTTATGGTAGCCGCATTTGGGTCTGGAGCCTTATTTTCGTTGGT GAGTGGGGTGGGTGGCCCAAATCCTGCTGCAAATGCAATCTCGTCTGGATTCTTTTTCGCGGTTGTTCAGGGTGGCCTTTACCAGTTAGGACAGAAGTTC TCTCAGCCTCCAGCTGAAGATGTGCACTATGCGAGAACTCGATCCATGCTTGGTAAGCTCGGGCTTCCGAACTATGAGAAGAATTTTAAGAAGGGCTTGC TGAATGACAATACATTACCATTGCTGACAGACAGTGCACTTAGAGACGTGAAAATCCCTCCTGGACCAAGGCTGCTTATTCTTGACCATATTCAGAGGTT CTAA
AA sequence Show only first row Show all	>Lus10032959 pacid=23160317 polypeptide=Lus10032959 locus=Lus10032959.g ID=Lus10032959.BGIv1.0 annot-version=v1.0 MGDSKQGFTLAKVNFNDNPFQSLQHKYKELETTFKTWVSQQSIPVEAAIVTATGAIQGAAIGGLMGTLTGEMASPLSPPPQASLNPQAMASFKQAQALTG GPLAQARNFAVMTGANAGIACVMKRVRGKEDVQSSPHVMHEASVSTLTEQLILMVAAFGSGALFSLVSGVGGPNPAANAISSGFFFAVVQGGLYQLGQKF SQPPAEDVHYARTRSMLGKLGLPNYEKNFKKGLLNDNTLPLLTDSALRDVKIPPGPRLLILDHIQRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24650			Mitochondrial import inner mem...		Lus10032959 [exp]	0	1
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026815 [exp]	2.8	0.8360
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10039311 [exp]	9.6	0.7775
AT1G71460			Pentatricopeptide repeat (PPR-...		Lus10006175 [exp]	11.6	0.8169
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Lus10011014 [exp]	13.6	0.8292
AT2G27590			S-adenosyl-L-methionine-depend...		Lus10020593 [exp]	15.4	0.7674
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Lus10040987 [exp]	17.0	0.8285
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10000126 [exp]	24.6	0.8248
					Lus10008149 [exp]	32.0	0.7627
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10029675 [exp]	35.1	0.7240
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012071 [exp]	37.8	0.7747

Compare expression of checked genes

Lus10032959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.