Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04635 194 / 1e-64 EMB1687 EMBRYO DEFECTIVE 1687, ribonuclease P family protein / Rpp14 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005287 [exp] 287 / 3e-101 AT1G04635 203 / 3e-68 EMBRYO DEFECTIVE 1687, ribonuclease P family protein / Rpp14 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G001200 [exp] 236 / 3e-81 AT1G04635 215 / 6e-73 EMBRYO DEFECTIVE 1687, ribonuclease P family protein / Rpp14 family protein (.1) Potri.015G001000 [exp] 224 / 2e-76 AT1G04635 204 / 2e-68 EMBRYO DEFECTIVE 1687, ribonuclease P family protein / Rpp14 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01900 [flax] [poplar] RNase_P_Rpp14 Rpp14/Pop5 family
Representative CDS sequence Show only first row Show all	>Lus10032961 pacid=23160372 polypeptide=Lus10032961 locus=Lus10032961.g ID=Lus10032961.BGIv1.0 annot-version=v1.0 ATGGTGATGGAAGTCTTCTTGGATCCAAATCGAGACTTCAAAGGCAATGATCCTATTATTATTACGCCGTTCAATTTGATGAAAGCTATCAAAGAAAGCA TTCTCTTAAACTTCGGGGAATGTGGTTTGGCTTCATCACTTGGATCATTGCAGGTCAAGTATGTGAACCCCATCACAAAAATATGTATTATCAGAGTTTC TAGAGAGAGTCATCAAAATGTTTGGTCAGCTATTACCATGGTGCAGAGTATTGGGAATTGCCCAGCGTTACTCAACCTACTCGATCTTAGTGGAAATATA AGGGCTTGTAAAGTAGCTGCATTGAAATGTGATGAAAAGAAGTTTGAGCACTGCAAGCTCATGGCTGGAGAGCTACTGTCTGCTGATGTAAGCCAGCAGA TGCATAACTGTCTGGAAAAGATAAAACTTCTGGAATACTGA
AA sequence Show only first row Show all	>Lus10032961 pacid=23160372 polypeptide=Lus10032961 locus=Lus10032961.g ID=Lus10032961.BGIv1.0 annot-version=v1.0 MVMEVFLDPNRDFKGNDPIIITPFNLMKAIKESILLNFGECGLASSLGSLQVKYVNPITKICIIRVSRESHQNVWSAITMVQSIGNCPALLNLLDLSGNI RACKVAALKCDEKKFEHCKLMAGELLSADVSQQMHNCLEKIKLLEY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04635		EMB1687	EMBRYO DEFECTIVE 1687, ribonuc...		Lus10032961 [exp]	0	1
AT5G17190			unknown protein		Lus10005110 [exp]	13.0	0.7869
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10028700 [exp]	14.0	0.7736
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10004925 [exp]	16.9	0.7396
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10027392 [exp]	17.0	0.7808
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10027505 [exp]	17.0	0.7546
AT5G44060			unknown protein		Lus10011797 [exp]	30.3	0.7616
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10019942 [exp]	35.5	0.7400
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Lus10026063 [exp]	41.3	0.6549
AT4G09670			Oxidoreductase family protein ...		Lus10001327 [exp]	41.7	0.7482
AT5G09330	NAC	VNI1, ANAC082	VND-interacting 1, NAC domain ...		Lus10020896 [exp]	42.8	0.6965

Compare expression of checked genes

Lus10032961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.