Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54140 545 / 0 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1) AT3G02875 421 / 6e-145 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT1G51760 417 / 2e-143 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT5G56660 410 / 4e-141 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT1G51780 395 / 3e-135 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G56650 388 / 2e-132 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT1G44350 369 / 3e-124 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015388 [exp] 746 / 0 AT5G54140 461 / 7e-161 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10030659 [exp] 467 / 3e-163 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 463 / 1e-161 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 451 / 2e-156 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 444 / 6e-154 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10037601 [exp] 424 / 4e-146 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10016998 [exp] 411 / 5e-141 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10021321 [exp] 410 / 2e-140 AT3G02875 573 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10025668 [exp] 401 / 5e-137 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G004000 [exp] 612 / 0 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.012G007400 [exp] 602 / 0 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.010G035900 [exp] 449 / 7e-156 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.016G074100 [exp] 437 / 4e-151 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207400 [exp] 436 / 5e-151 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.002G082400 [exp] 436 / 9e-151 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.003G045200 [exp] 434 / 3e-150 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.005G178900 [exp] 433 / 3e-149 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.006G207300 [exp] 430 / 9e-149 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10032963 pacid=23160449 polypeptide=Lus10032963 locus=Lus10032963.g ID=Lus10032963.BGIv1.0 annot-version=v1.0 ATGAGAGGAAAAGGAAATGGTTCCGTAGCCCCTCTACAGATTCTGTGGTGCTACTGCTGCTTCATTGTTTTCATTTGCCTTCCACTTGTAGTTCAGTCCG ATGAGATTTTGGGAAATGAAATCCTCAGCTTAGCTCAACAACACAAAGATTGGTTAGTATCCATTCGGAGAGAAATCCACGAAAACCCAGAACTTCGATT CCAAGAACACAACACCAGCTCCCTCATTCGAAGGGAACTCGACGCTCTGAGCATTCGTTACATTTACCCAGTTGCTAAAACTGGAGTGGTTGCTGTAATC GGTTCAGGCTCGCCCCCAGTCGTCGCTCTTCGTGCCGATATAGATGCTCTCCCACTCCAAGAGTTGGTTCAGTGGAAGCACAAGAGCAAAATCGATGGGA AGATGCATGGGTGTGGACATGATGCCCACACCACCATGTTACTTGGTGCTGCCAAGTTGCTTAATCAAAAGAAACATCTGCTCAAGGGGACTGTGAGACT TCTTTTCCAACCGGCTGAGGAGGGAGGTGCAGGGGCATTGCATATGATACGAGAAGGGGCTCTTGGTGATGCTGAAGCGATATTTGGGATGCACATCGAC GCTCAGATGCCAACCGGAATGATATCATCCCTTCCAGGATCCATATTAGCTGCTGTCTCATTCTTTGAAGTGAAGATACAAGGCAAAGGTGGTCATGCAG CAGAACCTCATACTAATATAGATCCTATAGTTGCTACTTCTTTCACAATTTTGGCACTTCAACAACTCATATCAAGAGAAGCTGATCCCCTTGGTAGTCA AGTGCTGTCTGTTACTTACGTGAGAGGCGGAGATGCGTTCAACGTAATCCCTCCATATGTTGTGTTTGGGGGAACATTGAGGAGTCTAACGACGGAAGGG TTGAATCAACTCCAGAAGAGGCTGAAAGAGGTGGTGGTGGGGCAAGCTCAAGTACAACGATGCGTAGCAGAGATCGACATGAAAGAAGAGGAGTACCCAG CATATCCAGCGGTAGTGAATGACGCGAGGCTGAACGAGGAGGTGCAGAGGATAGGGAAGCTTGTTCTAGGGGAGGAGAATGTGAAAGCTGGGACGAAAGT AATGGCGGGGGAAGACTTTGCGTTTTACCAACAACAGATTCCAGGAGTGATGCTTAGCATTGGGATAAGGAACGAGCAGATTGGGTCAGTTCATTCACCA CACTCTCCTTACTTCTTTCTCGATGAAGATGCTCTCCCTATTGGGGCTGCCATCCATACAGCCCTAGCCCACTCTTACCTACATCACCATACACACAAAG GCACACTTGTATAA
AA sequence Show only first row Show all	>Lus10032963 pacid=23160449 polypeptide=Lus10032963 locus=Lus10032963.g ID=Lus10032963.BGIv1.0 annot-version=v1.0 MRGKGNGSVAPLQILWCYCCFIVFICLPLVVQSDEILGNEILSLAQQHKDWLVSIRREIHENPELRFQEHNTSSLIRRELDALSIRYIYPVAKTGVVAVI GSGSPPVVALRADIDALPLQELVQWKHKSKIDGKMHGCGHDAHTTMLLGAAKLLNQKKHLLKGTVRLLFQPAEEGGAGALHMIREGALGDAEAIFGMHID AQMPTGMISSLPGSILAAVSFFEVKIQGKGGHAAEPHTNIDPIVATSFTILALQQLISREADPLGSQVLSVTYVRGGDAFNVIPPYVVFGGTLRSLTTEG LNQLQKRLKEVVVGQAQVQRCVAEIDMKEEEYPAYPAVVNDARLNEEVQRIGKLVLGEENVKAGTKVMAGEDFAFYQQQIPGVMLSIGIRNEQIGSVHSP HSPYFFLDEDALPIGAAIHTALAHSYLHHHTHKGTLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10032963 [exp]	0	1
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10042847 [exp]	1.0	0.9035
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10021423 [exp]	1.4	0.8933
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10022524 [exp]	4.2	0.8796
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	4.5	0.8786
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10019047 [exp]	5.0	0.8737
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	5.3	0.8704
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	6.3	0.8666
AT1G62620			Flavin-binding monooxygenase f...		Lus10024598 [exp]	6.6	0.8386
AT2G36410			Family of unknown function (DU...		Lus10035563 [exp]	9.4	0.8631
AT1G56423			unknown protein		Lus10031415 [exp]	9.5	0.8707

Compare expression of checked genes

Lus10032963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.