Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20050 231 / 9e-77 HYD1 HYDRA1, C-8,7 sterol isomerase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015386 [exp] 405 / 1e-145 AT1G20050 261 / 1e-88 HYDRA1, C-8,7 sterol isomerase (.1) Lus10027993 [exp] 380 / 1e-135 AT1G20050 266 / 1e-90 HYDRA1, C-8,7 sterol isomerase (.1) Lus10008164 [exp] 197 / 5e-65 AT1G20050 164 / 4e-52 HYDRA1, C-8,7 sterol isomerase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G160500 [exp] 312 / 5e-109 AT1G20050 269 / 4e-92 HYDRA1, C-8,7 sterol isomerase (.1) Potri.001G070301 [exp] 140 / 5e-43 AT1G20050 115 / 1e-33 HYDRA1, C-8,7 sterol isomerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05241 [flax] [poplar] EBP EXPERA (EXPanded EBP superfamily)
Representative CDS sequence Show only first row Show all	>Lus10032965 pacid=23160430 polypeptide=Lus10032965 locus=Lus10032965.g ID=Lus10032965.BGIv1.0 annot-version=v1.0 ATGGAAGGGTCAGTTCATCCGCATCCCTATGTACCCAGGGATCTCCAACTCCCCGGTTTCGCTCCTCAATTTCTCTCTCAGTCCGCTATCCTCGGAATCT TCGGCATCGCCTCTCTTCTTGTCGTTTCAATCGTCTGGCTCTTCTCTGGCTTCTCCGGCAAAAAGATAACTAAACTTGACAGATTGCTCATGTGCTGGTG GGCTTTCACCGGTCTCACCCACTTGATTCTCGAAGGTTATTTCGCCTTTGCACCCGAGTTTTACAAGGACAAATCGGGCTTTTTTCTTGCTGAAGTCTGG AAAGAATACAGCAAGGGTGATTCAAGATACGCAGCAAGAGATTCTGGTGTAGTTTCCGTGGAAGGATTGACCGCAGTCTTGGAAGGTCCAGCCTGCCTGT TAGCAGTATATGGGATTGCTGCAGGGAAGTCATACAGTTACATACTGCAGTTTGCTATATCTCTGGGTCAGCTATATGGAACTGCAGTCTATTTCATTAC CTCTTATCTTGAAGGAGATAACTTTGCTGCCACTCCCTTTTACTACTATGCTTACTACATTGGTGCAAATGCATCATGGGTTGTCATACCTTCGCTCATC GCCGTGCGCTGTTGGAGGAAGACTTGTCAAGCCTTCAACCTCCAAGCATCCAAAAAGACCAAAACTCGCTGA
AA sequence Show only first row Show all	>Lus10032965 pacid=23160430 polypeptide=Lus10032965 locus=Lus10032965.g ID=Lus10032965.BGIv1.0 annot-version=v1.0 MEGSVHPHPYVPRDLQLPGFAPQFLSQSAILGIFGIASLLVVSIVWLFSGFSGKKITKLDRLLMCWWAFTGLTHLILEGYFAFAPEFYKDKSGFFLAEVW KEYSKGDSRYAARDSGVVSVEGLTAVLEGPACLLAVYGIAAGKSYSYILQFAISLGQLYGTAVYFITSYLEGDNFAATPFYYYAYYIGANASWVVIPSLI AVRCWRKTCQAFNLQASKKTKTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	0	1
AT5G65980			Auxin efflux carrier family pr...		Lus10001303 [exp]	2.2	0.8794
AT1G34770			unknown protein		Lus10033452 [exp]	2.6	0.8399
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	4.2	0.8709
AT5G10110			unknown protein		Lus10022498 [exp]	4.9	0.8513
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10024194 [exp]	6.2	0.7638
					Lus10006286 [exp]	6.3	0.8502
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10013284 [exp]	6.5	0.7968
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10039600 [exp]	6.9	0.8145
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Lus10019878 [exp]	7.5	0.8668
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10041972 [exp]	7.9	0.7727

Compare expression of checked genes

Lus10032965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.