Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15540 336 / 6e-99 EMB2773, ATSCC2 EMBRYO DEFECTIVE 2773, ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2, PHD finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015385 [exp] 496 / 7e-156 AT5G15540 2092 / 0.0 EMBRYO DEFECTIVE 2773, ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2, PHD finger family protein (.1.2) Lus10031015 [exp] 163 / 3e-45 ND / Lus10019581 [exp] 149 / 6e-41 ND / Lus10023812 [exp] 146 / 2e-39 ND / Lus10019580 [exp] 121 / 9e-32 ND / Lus10024766 [exp] 122 / 2e-31 ND / Lus10019626 [exp] 115 / 3e-30 ND / Lus10012669 [exp] 118 / 2e-29 ND / Lus10029192 [exp] 112 / 2e-28 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092600 [exp] 381 / 1e-114 AT5G15540 2142 / 0.0 EMBRYO DEFECTIVE 2773, ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2, PHD finger family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032966 pacid=23160439 polypeptide=Lus10032966 locus=Lus10032966.g ID=Lus10032966.BGIv1.0 annot-version=v1.0 ATGAGCAATCTGACGGCTGAACCCAGCGGTTCTAGATCAGGATTCTCCTTGCAAGGGATTGGACTCTCCAACACAATACATTCGGAAGTTGCGCCATGCT TGTCGTTGCCTTCGCTTCCGGTGTTCTGCGGCGCTTCCGAACCGGAAATCCGAATTCTCGATGAGCGCGGTGGTGGTGGAAGTCTTTCGTATTTGGATCG AAGTGAAATTGTAGCTCAGTCTGCTAGAATTGCTGAACTGCTTCGAGAAACTGATGTTTCGTACATGTATCTTTGCACGTTGAGTAGGGTTGGTGGAAAA GGGGCTAGTGTAGTTGAGTTCCTTATACAGATGTTCTTCAAACGTCTAGATGCTCAAACTCAAACATTTGAAAATAAACAGTTGGTAGTTCGTTCTCTGT TCTGCTTTGGGTTGCTTATTCGTTATGGAAGTCCTCTGGTCAGTGAGTTGAGTAACAAAAATATTGATATTGCAAGTAGTCTCAGCTTTTTTAAGAAATA CCTCATAGTGGACGACTTCAGTGTCAAAGTCAGATCGCTGCAGGCCTTAGGCTTTGTCCTAATTGCCAGACCCGAACATATGCTAGAGAAAGATATTGGA AAAATATTGGAAGCAGCTTTATCACCGAGTTCTCATGTTCATATGAAGATGCAAGCACTGCAAAATCTGTATGAGTATCTTCTGCATGCGGAAAACAAGT TGGAAACAGATAAAACTAGCAATGATGCTCAAAATTCTGTTGGAGCTGGTCAAAGGGTACCAGTTGCTGCAGGTGCTGGTGATACTAACATATGTGGTGG TATCGTCCAGTTATATTTTGATCGCATCATAGGAAGGTGCTTAGATTTCAATGCCCAAGTTCGCAAGACTACACTTCAGATTGTGGAGGTAGTGCTACGG CAAGGTCTTGTTCATCCTATTAGTTGTGTTCCCCATCTCATAGCCCTAGAAACTGACCCATTAGAGTCTAACTCAAAGTTGGCACATCATCTTCTGATGA ATATGAATGAGAAGTACTGTACCGAAGTGCTTGCTCTACTGCCATTCACTATTCCCGATGAACCACTCTATCTTGTTTATTCTATAAATCGGGTTATCCA AGTTAGGGCTGGGGTGCTTGAGGCAAACATGAAGGGCCTCATATTGCATCTGTCACAAAGAAATGCCCGTAGGCCACACCAGGATACTGAATTAGTTCAC CCAGAAGCAAATCAGCTTCATTTCCAGCAAGTGGACAAATTGGACTTTGATGGATTGGTTAATGAACAGCATGTTGGTTCGCCATTATTTGATTTGAATG GAACGGCGAATGAGGAGCCGCCTGACCAGTCAGTTTTGACCTCAAGAGATCCAAAAGCAAGGTATACGAAGTCAGTTGAGCCTTGCAGCATCTCTGAGGA TGATGTCAAAAGAATTCAGGTTGATTGTCTGTCAGCCACTGCATTGCAGCTTCTTCTAAAGCTGAAGAGGCACCTAAAAATTGTGTATGGCCTGAATGAT GCCCGCTGTCAGGCATTTTCACCAAACGAACCCCCAAAACCTGGAGAGAATTTATCTAGGCAGAATGTTCCCTTTGACATAAGTGAAACGCGGACTGGTT TGGCATCAACTTACCAAGATTTGGTACAAGGATATCAGATTTTAGTCTTCTCAAGATCTAATCTTGTCTCTCTTGACAATTTTGCATATGGTGTTGCTGC AAGGTTCAAGACGAAGTTGGAGGTGGTGTTGCCTGAGATCTCGGTGAGGTGCGAGATGCAAGCTACAATGGAGGCGAAACTTGTTGAGAAGGATGCTGAG ATTAAAGCTCTTCGTGCTGAGCTAGCACATGATCGTTCTGAATGGCAGCGTGAGCGGATATGCATCATACGGTCTAACGATAGGTACATCGAGACTCGCA CTGAAGACTTGAAGGCTGCAAATACGGAGCATAGAAGGTTTAGGGTTCCTGTGGAGCTGTATTTCGAGTTGAAAGGTCCAATCGACAAAGTTTATGGCTC AGTTGGTCAATCCTTAACGATTGGGTACTTTCAACCTTCTGGTTCACAGAACGTTGACGAGGTCTCACAGTGTGGCGTACAATCCAACGCTGATATCGTG GATGAAGATGACGTTGACGACGAGCCTGAGTATGATCTGGGTAACAACAATAGGGAAGGGGAAGATGACCAGGCCTCGAGTGAGGACGACGACGGTACGC CGATTGGCCCTCTCCATCTAGAGGGGGAGGATAACATCCTAGACCGAGACTACTAG
AA sequence Show only first row Show all	>Lus10032966 pacid=23160439 polypeptide=Lus10032966 locus=Lus10032966.g ID=Lus10032966.BGIv1.0 annot-version=v1.0 MSNLTAEPSGSRSGFSLQGIGLSNTIHSEVAPCLSLPSLPVFCGASEPEIRILDERGGGGSLSYLDRSEIVAQSARIAELLRETDVSYMYLCTLSRVGGK GASVVEFLIQMFFKRLDAQTQTFENKQLVVRSLFCFGLLIRYGSPLVSELSNKNIDIASSLSFFKKYLIVDDFSVKVRSLQALGFVLIARPEHMLEKDIG KILEAALSPSSHVHMKMQALQNLYEYLLHAENKLETDKTSNDAQNSVGAGQRVPVAAGAGDTNICGGIVQLYFDRIIGRCLDFNAQVRKTTLQIVEVVLR QGLVHPISCVPHLIALETDPLESNSKLAHHLLMNMNEKYCTEVLALLPFTIPDEPLYLVYSINRVIQVRAGVLEANMKGLILHLSQRNARRPHQDTELVH PEANQLHFQQVDKLDFDGLVNEQHVGSPLFDLNGTANEEPPDQSVLTSRDPKARYTKSVEPCSISEDDVKRIQVDCLSATALQLLLKLKRHLKIVYGLND ARCQAFSPNEPPKPGENLSRQNVPFDISETRTGLASTYQDLVQGYQILVFSRSNLVSLDNFAYGVAARFKTKLEVVLPEISVRCEMQATMEAKLVEKDAE IKALRAELAHDRSEWQRERICIIRSNDRYIETRTEDLKAANTEHRRFRVPVELYFELKGPIDKVYGSVGQSLTIGYFQPSGSQNVDEVSQCGVQSNADIV DEDDVDDEPEYDLGNNNREGEDDQASSEDDDGTPIGPLHLEGEDNILDRDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10032966 [exp]	0	1
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	1.0	0.8808
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	4.2	0.8597
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	5.0	0.8362
AT1G52630			O-fucosyltransferase family pr...		Lus10026792 [exp]	5.1	0.7999
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10017736 [exp]	15.3	0.7891
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	15.5	0.8373
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10024724 [exp]	16.7	0.7750
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10017623 [exp]	18.4	0.8084
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	18.9	0.8150
AT5G15170		TDP1	tyrosyl-DNA phosphodiesterase ...		Lus10018371 [exp]	20.1	0.7739

Compare expression of checked genes

Lus10032966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.